From 999e7c8025a5d477b65d318a8f5eb6b5f1d2e1b6 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 25 Jun 2024 13:14:58 +0000
Subject: [PATCH] differences for PR #101

---
 md5sum.txt | 2 +-
 setup.md   | 2 ++
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/md5sum.txt b/md5sum.txt
index 2c0e6cca..e7babffb 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -13,6 +13,6 @@
 "episodes/superspreading-simulate.Rmd" "d8115ade50d393a3419734a111bb318c" "site/built/superspreading-simulate.md" "2024-06-19"
 "instructors/instructor-notes.md" "ca3834a1b0f9e70c4702aa7a367a6bb5" "site/built/instructor-notes.md" "2024-06-19"
 "learners/reference.md" "18f9dcee553dc88dba8caf6436f8ca41" "site/built/reference.md" "2024-06-19"
-"learners/setup.md" "467b76e9e322db67dafa3e08909dde5e" "site/built/setup.md" "2024-06-19"
+"learners/setup.md" "0861a9169e913f6927b8551b2fe4f1f0" "site/built/setup.md" "2024-06-25"
 "profiles/learner-profiles.md" "31b503c4b5bd1f0960ada730eca4a25e" "site/built/learner-profiles.md" "2024-06-19"
 "renv/profiles/lesson-requirements/renv.lock" "7e8bb90bead16958cb11433448901b3e" "site/built/renv.lock" "2024-06-19"
diff --git a/setup.md b/setup.md
index 7403aed1..5b450933 100644
--- a/setup.md
+++ b/setup.md
@@ -106,6 +106,8 @@ Open RStudio and **copy and paste** the following code chunk into the [console w
 ```r
 # for episodes on access delays and quantify transmission
 
+if(!require("pak")) install.packages("pak")
+
 new_packages <- c(
   "EpiNow2",
   "epiverse-trace/epiparameter",