From 0f0f9b67112d8e814b3f7e8f9e401eca91e2fd66 Mon Sep 17 00:00:00 2001
From: Michael Himes <mhimes@knights.ucf.edu>
Date: Fri, 5 Jan 2024 17:20:17 -0500
Subject: [PATCH] Updated to py3.8.  Version bump.

---
 environment.yml          | 22 +++++++++++-----------
 example/dream_example.py |  2 +-
 lisa/_version.py         |  2 +-
 lisa/wrappers/helper.py  |  1 +
 setup.py                 |  6 +++---
 5 files changed, 17 insertions(+), 16 deletions(-)

diff --git a/environment.yml b/environment.yml
index d0b32d5..5d4df07 100644
--- a/environment.yml
+++ b/environment.yml
@@ -2,17 +2,17 @@ name: lisa
 channels:
   - conda-forge
 dependencies:
-  - python=3.7.2
-  - mpi4py=3.0.3
+  - python=3.8.18
+  - mpi4py=3.1.4
   - mpich=3.3.2
-  - cython=0.29.5
-  - matplotlib=3.0.2
-  - numpy=1.16.5
+  - numpy=1.24.3
+  - matplotlib=3.7.2
+  - multiprocess=0.70.15
   - scipy=1.5.3
-  - yaml=0.1.7
-  - h5py=2.10.0
-  - multinest=3.10
-  - pymultinest=2.9
-  - ultranest=2.2.1
-  - dynesty=1.0.1
+  - yaml=0.2.5
+  - h5py=3.1.0
+  - pymultinest=2.12
+  - ultranest=3.6.4
+  - dynesty=2.1.2
   - dnest4=0.2.4
+  - emcee=3.1.4
diff --git a/example/dream_example.py b/example/dream_example.py
index 19e0bb6..657b674 100755
--- a/example/dream_example.py
+++ b/example/dream_example.py
@@ -37,7 +37,7 @@
 # Run it
 samp = lisa.run('dream', fbestp='output_bestp.npy', fext='.png', 
                          fprefix='model', fsavefile='output_posterior.npy', 
-                         loglike=loglike, nchains=4, niter=100000, 
+                         loglike=loglike, nchains=4, niter=30000, 
                          outputdir=outputdir, pmax=pmax, pmin=pmin, pnames=pnames, 
                          pstep=pstep, thinning=1, truepars=pars, verb=1)
 
diff --git a/lisa/_version.py b/lisa/_version.py
index 58d168b..5a6f84c 100644
--- a/lisa/_version.py
+++ b/lisa/_version.py
@@ -1 +1 @@
-__version__ = '0.4'
+__version__ = '0.5'
diff --git a/lisa/wrappers/helper.py b/lisa/wrappers/helper.py
index 42a8048..789ad26 100644
--- a/lisa/wrappers/helper.py
+++ b/lisa/wrappers/helper.py
@@ -5,6 +5,7 @@
 mcpdir = os.path.join(os.path.dirname(__file__), '..', 'modules', 'MCcubed', 
                                                        'MCcubed', 'plots')
 sys.path.append(mcpdir)
+sys.path.append(os.path.join(mcpdir, '..', 'lib')) # so that mcplots finds binarray
 import mcplots as mcp
 
 
diff --git a/setup.py b/setup.py
index 0c5e623..0e3407b 100644
--- a/setup.py
+++ b/setup.py
@@ -44,8 +44,8 @@ def run(self):
         "Operating System :: OS Independent",
         ],
     python_requires='>=3.6',
-    install_requires=['numpy>=1.16', 'cython>=0.29.5', 'matplotlib>=3.0', 
-                      'pymultinest==2.9', 'ultranest==2.2.1', 'dynesty==1.0.1', 
-                      'dnest4==0.2.4', 'mpi4py==3.0.3'], 
+    install_requires=['numpy>=1.16', 'matplotlib>=3.0', 
+                      'pymultinest==2.9', 'ultranest>=2.2.1', 'dynesty>=1.0.1', 
+                      'dnest4>=0.2.4', 'mpi4py>=3.0.3'], 
     cmdclass={'build_py': lisa_build}
     )