[BUG] clean up quotes from strings with spaces

[DumpySquare]

The regexs that are used also check for strings in quotes, which also means they capture the quotes around those strings. When those strings are added to a json object, they get a bit redundant and can cause some problems.

[DumpySquare]

created a new "trimQuotes" function to be used in the project. This has already been used in the options parsing function.

need to add it to other key strings, mainly object names