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Contig Concatenation Script with Dynamic Output Name

This Python script concatenates contig sequences from a multi-FASTA file into a single contig. The name of the concatenated contig will match the base name of the input file, removing the ".fasta" extension.

Requirements

  • Python 3
  • Biopython library (pip install biopython)

Usage

Running the Script

  1. Clone the repository or download the concatenate_contigs.py script.

  2. Give full permission (chmod +rwx concatenate_contigs.py).

  3. Execute the script from the command line, providing the required arguments:

    python concatenate_contigs.py <input_fasta> <output_fasta>

Contributions

Contributions are welcome via pull requests. For major changes, please open an issue first to discuss what you would like to change.

License

This project is licensed under the MIT License.