diff --git a/flatpak_builder_lint/checks/flatmanager.py b/flatpak_builder_lint/checks/flatmanager.py
index 8860e7d5..5d7edfae 100644
--- a/flatpak_builder_lint/checks/flatmanager.py
+++ b/flatpak_builder_lint/checks/flatmanager.py
@@ -8,9 +8,18 @@
 
 class FlatManagerCheck(Check):
     def check_repo(self, path: str) -> None:
+        flathub_hooks_cfg_paths = [
+            "/run/host/etc/flathub-hooks.json",
+            "/etc/flathub-hooks.json",
+        ]
+
         if build_id := os.getenv("FLAT_MANAGER_BUILD_ID"):
-            with open("/etc/flathub-hooks.json") as f:
-                flathub_hooks_cfg = json.load(f)
+            flathub_hooks_cfg = {}
+            for flathub_hooks_cfg_path in flathub_hooks_cfg_paths:
+                if os.path.exists(flathub_hooks_cfg_path):
+                    with open(flathub_hooks_cfg_path) as f:
+                        flathub_hooks_cfg = json.load(f)
+                    break
 
             flatmgr_url = os.getenv("FLAT_MANAGER_URL")
             if not flatmgr_url:
diff --git a/pyproject.toml b/pyproject.toml
index 9232a559..1820474b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "flatpak_builder_lint"
-version = "2.0.9"
+version = "2.0.10"
 description = "A linter for flatpak-builder manifests"
 authors = ["Bartłomiej Piotrowski <b@bpiotrowski.pl>"]
 license = "MIT"