diff --git a/modules/fastp.nf b/modules/fastp.nf index 7402b72..4b0def5 100644 --- a/modules/fastp.nf +++ b/modules/fastp.nf @@ -30,10 +30,11 @@ process FASTP { reads_param = "-i ${sreads} -o ${id}.preprocessed.fq.gz" } correction_param = (params.fastp_correct_pairs) ? "--correction" : "" + additional_param = (params.fastp_additional_parameters) ? "${params.fastp_additional_parameters}" : "" """ # run fastp fastp \\ - ${params.fastp_additional_parameters} \\ + $additional_param \\ --thread ${task.cpus} \\ --average_qual ${params.fastp_average_quality} \\ --json ${id}_fastp.json \\