fmalmeida/ngs-preprocess v2.3

The pipeline

ngs-preprocess is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. It is an easy to use pipeline that uses state-of-the-art software for quality check and pre-processing ngs reads of Illumina, Pacbio and Oxford Nanopore Technologies.

Version

Relase notes

In summary, this release reconfigures the pipeline to be more likely nf-core pipelines enabling users to run it with docker, singularity or conda. The release notes can be checked in the CHANGELOG.md.

fmalmeida/ngs-preprocess v2.2

The pipeline

ngs-preprocess, is a customisable easy to use pipeline that uses state-of-the-art software for pre-procesing ngs reads of Illumina, Pacbio and Oxford Nanopore Technologies sequencing platforms having only Docker and Nextflow as dependencies.

Version

The latest changes applied from version 2.1 to 2.2 are described in the CHANGELOG.md file.

fmalmeida/NGS-preprocess v2.1

Changes

Fixed problems with pacbio data

Now working with pacbio legacy data in *.bas.h5 format and in new *.bam format

fmalmeida/NGS-preprocess v2.0

This version marks the change from Nextflow DSL 1 to Nextflow DSL 2.

This change will make it easier for users to customize the pipeline in their own way.