Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

A typo in the paper supplementary regarding the beta prior #6

Open
frankligy opened this issue May 19, 2023 · 0 comments
Open

A typo in the paper supplementary regarding the beta prior #6

frankligy opened this issue May 19, 2023 · 0 comments

Comments

@frankligy
Copy link
Owner

Dear users,

It has been brought to my attention that there's a typo in my paper supplementary regarding the beta prior, so in the supplementary, it said:

Screen Shot 2023-05-19 at 9 23 47 AM

But actually, Beta(32,1) is used for positive-high, Beta(30,1) is used for positive-intermediate and positive, it can be seen from the code:

https://github.com/frankligy/DeepImmuno/blob/main/src/immuno3_3.py#L17-L43

def assign_prior(label):
    if label == 'Positive-High':
        return (32,1)   # beta(15,1)   mean=0.93, std = 0.05
    elif label == 'Positive' or label == 'Positive-Intermediate':
        return (30,1)   # beta(10,1)   mean = 0.90  std = 0.08
    elif label == 'Positive-Low':
        return (28,1)    # beta(5,1)   mean = 0.83, std = 0.14
    elif label == 'Negative':
        return (3,3)    # beta(3,4)   mean = 0.42, std = 0.17

I apologize for any confusion caused by that, and please feel free to reach out for any questions!

Sincerely,
Frank

@frankligy frankligy changed the title A type in the paper supplementary regarding the beta prior A typo in the paper supplementary regarding the beta prior May 19, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant