Tool to "invert" the alignments

[nh13]

I want to "invert" the IGV view, where the read/query becomes the target/reference in IGV, and the expected vector/plasmid becomes the read. This would allow you to view the read as the contig in IGV, and then look at the read to see where each part comes from. You could then gather the alignments from all the various plasmids into one visualization.