diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index bab071e0..b0a02516 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -52,8 +52,9 @@ jobs: fail-fast: false matrix: config: + # This needs to be updated after each Bioconductor release. Please make sure we have the matching R and Bioc versions in it. - { os: ubuntu-latest, r: '4.3', bioc: '3.18', cont: "bioconductor/bioconductor_docker:RELEASE_3_18", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } - - { os: ubuntu-latest, r: 'next', bioc: '3.18', cont: "bioconductor/bioconductor_docker:RELEASE_3_18", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } + - { os: ubuntu-latest, r: 'next', bioc: '3.19', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } - { os: macOS-latest, r: '4.3', bioc: '3.18'} - { os: windows-latest, r: '4.3', bioc: '3.18'} ## Check https://github.com/r-lib/actions/tree/master/examples @@ -313,7 +314,7 @@ jobs: if: failure() uses: actions/upload-artifact@master with: - name: ${{ runner.os }}-biocversion-RELEASE_3_16-r-4.2-results + name: ${{ runner.os }}-biocversion-RELEASE_3_18-r-4.3-results path: check ## Note that DOCKER_PASSWORD is really a token for your dockerhub