From 700e6f6979fd77dc174e5098263914ab15483efc Mon Sep 17 00:00:00 2001 From: Pascale Gaudet Date: Thu, 30 Jan 2025 13:55:13 +0100 Subject: [PATCH] fixed parents for #27678 --- src/ontology/go-edit.obo | 35 ++++++++++++++++++++--------------- 1 file changed, 20 insertions(+), 15 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index b2aba852e..de6d1e9aa 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -33331,7 +33331,7 @@ synonym: "reduced nicotinamide-adenine dinucleotide (phosphate) dehydrogenase ac synonym: "viologen accepting pyridine nucleotide oxidoreductase activity" NARROW [EC:1.6.5.2] synonym: "vitamin K reductase activity" NARROW [EC:1.6.5.2] synonym: "vitamin-K reductase activity" NARROW [EC:1.6.5.2] -xref: EC:1.6.5.2 +xref: EC:1.6.5.2 {source="skos:exactMatch"} xref: MetaCyc:NQOR-RXN xref: UM-BBD_reactionID:r0227 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor @@ -33427,9 +33427,9 @@ synonym: "TPNH dehydrogenase activity" RELATED [EC:1.6.99.1] synonym: "TPNH-diaphorase activity" RELATED [EC:1.6.99.1] synonym: "triphosphopyridine diaphorase activity" RELATED [EC:1.6.99.1] synonym: "triphosphopyridine nucleotide diaphorase activity" RELATED [EC:1.6.99.1] -xref: EC:1.6.99.1 +xref: EC:1.6.99.1 {source="skos:exactMatch"} xref: MetaCyc:NADPH-DEHYDROGENASE-RXN -xref: RHEA:13149 +xref: RHEA:13149 {source="skos:exactMatch"} is_a: GO:0016651 ! oxidoreductase activity, acting on NAD(P)H [Term] @@ -33442,7 +33442,8 @@ synonym: "quinone oxidoreductase activity" BROAD [EC:1.6.5.5] synonym: "zeta-crystallin activity" NARROW [EC:1.6.5.5] xref: EC:1.6.5.5 xref: MetaCyc:QOR-RXN -xref: RHEA:14269 +xref: RHEA:14269 {source="skos:exactMatch"} +is_a: GO:0003959 ! NADPH dehydrogenase activity is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Term] @@ -75832,6 +75833,7 @@ synonym: "ubiquinone reductase activity" EXACT [] xref: EC:7.1.1.2 xref: MetaCyc:NADH-DEHYDROG-A-RXN xref: RHEA:29091 +is_a: GO:0003954 ! NADH dehydrogenase activity is_a: GO:0009055 ! electron transfer activity is_a: GO:0015078 ! proton transmembrane transporter activity is_a: GO:0015453 ! oxidoreduction-driven active transmembrane transporter activity @@ -82674,6 +82676,7 @@ xref: MetaCyc:RXN0-271 {source="skos:narrowMatch"} xref: MetaCyc:RXN0-7385 {source="skos:exactMatch"} xref: RHEA:46164 {source="skos:exactMatch"} is_a: GO:0003955 ! NAD(P)H dehydrogenase (quinone) activity +is_a: GO:0003959 ! NADPH dehydrogenase activity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28526" xsd:anyURI [Term] @@ -123822,7 +123825,7 @@ is_a: GO:0016651 ! oxidoreductase activity, acting on NAD(P)H id: GO:0016656 name: monodehydroascorbate reductase (NADH) activity namespace: molecular_function -def: "Catalysis of the reaction: NADH + H+ + 2 monodehydroascorbate = NAD+ + 2 ascorbate." [EC:1.6.5.4] +def: "Catalysis of the reaction: 2 monodehydro-L-ascorbate radical + NADH + H+ = 2 L-ascorbate + NAD+." [RHEA:14581] synonym: "AFR" RELATED [EC:1.6.5.4] synonym: "AFR-reductase activity" RELATED [EC:1.6.5.4] synonym: "ascorbate free radical reductase activity" RELATED [EC:1.6.5.4] @@ -123838,9 +123841,9 @@ synonym: "NADH:monodehydroascorbate oxidoreductase activity" RELATED [EC:1.6.5.4 synonym: "NADH:semidehydroascorbic acid oxidoreductase activity" RELATED [EC:1.6.5.4] synonym: "SDA reductase activity" RELATED [EC:1.6.5.4] synonym: "semidehydroascorbate reductase activity" RELATED [EC:1.6.5.4] -xref: EC:1.6.5.4 +xref: EC:1.6.5.4 {source="skos:exactMatch"} xref: MetaCyc:1.6.5.4-RXN -xref: RHEA:14581 +xref: RHEA:14581 {source="skos:exactMatch"} is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Term] @@ -134076,7 +134079,7 @@ synonym: "NADPH:p-benzoquinone oxidoreductase activity" RELATED [EC:1.6.5.6] xref: EC:1.6.5.6 xref: KEGG_REACTION:R05244 xref: MetaCyc:1.6.5.6-RXN -xref: RHEA:23488 +xref: RHEA:23488 {source="skos:exactMatch"} is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Term] @@ -309194,11 +309197,11 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i id: GO:0050136 name: NADH:ubiquinone reductase (non-electrogenic) activity namespace: molecular_function -def: "Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol." [EC:1.6.5.9, GOC:mah, RHEA:46160] +def: "Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol." [RHEA:46160] synonym: "NADH dehydrogenase (quinone) activity" RELATED [] -xref: EC:1.6.5.9 +xref: EC:1.6.5.9 {source="skos:exactMatch"} xref: MetaCyc:1.6.99.5-RXN -xref: RHEA:46160 +xref: RHEA:46160 {source="skos:exactMatch"} is_a: GO:0003954 ! NADH dehydrogenase activity is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25784" xsd:anyURI @@ -316029,16 +316032,16 @@ id: GO:0050625 name: 2-hydroxy-1,4-benzoquinone reductase activity namespace: molecular_function alt_id: GO:0018540 -def: "Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+." [EC:1.6.5.7, RHEA:12428] +def: "Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+." [RHEA:12428] synonym: "1,2,4-trihydroxybenzene:NAD oxidoreductase activity" RELATED [EC:1.6.5.7] synonym: "1,2,4-trihydroxybenzene:NAD+ oxidoreductase activity" RELATED [EC:1.6.5.7] synonym: "2-hydroxy-1,4-benzoquinone:NADH oxidoreductase activity" RELATED [EC:1.6.5.7] synonym: "hydroxybenzoquinone reductase activity" RELATED [EC:1.6.5.-] synonym: "NADH:2-hydroxy-1,4-benzoquinone oxidoreductase activity" RELATED [EC:1.6.5.7] -xref: EC:1.6.5.7 +xref: EC:1.6.5.7 {source="skos:exactMatch"} xref: KEGG_REACTION:R05399 xref: MetaCyc:1.6.5.7-RXN -xref: RHEA:12428 +xref: RHEA:12428 {source="skos:exactMatch"} xref: UM-BBD_reactionID:r0667 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor @@ -439060,8 +439063,10 @@ replaced_by: GO:0008753 id: GO:0103036 name: NADH:menaquinone oxidoreductase activity namespace: molecular_function -def: "Catalysis of the reaction: 5 H+ + NADH + a menaquinone = 4 H+ + NAD + a menaquinol." [GOC:pz] +def: "Catalysis of the reaction: 5 H+ + NADH + a menaquinone = 4 H+ + NAD + a menaquinol." [GOC:pz, RHEA:29099] xref: MetaCyc:RXN0-5388 +xref: RHEA:29099 +is_a: GO:0003954 ! NADH dehydrogenase activity is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Term]