External Search for existing annotations

[tmushayahama]

This feature lets you quickly do an "external search" to Golr server for existing annotations for that particular GP and aspect. It works just like the Component Companion.

In Brief

Step 1 - Enter Gene Product

Step 2 - Select 1 or more rows and Click Save

Step 3 - Your fields are populated

@thomaspd Can you explain in more details.
@kltm @cmungall

[cmungall]

is this scheduled for 1.0?

[thomaspd]

I don’t think it’s in the requirements but it’s one of the first things curators ask for when they see Noctua. So as long as it doesn’t delay the 1.0 release date I think it would be good to include it. From: Chris Mungall <[email protected]> Reply-To: geneontology/simple-annoton-editor <[email protected]> Date: Monday, March 12, 2018 at 2:59 PM To: geneontology/simple-annoton-editor <[email protected]> Cc: Paul Denis Thomas <[email protected]>, Mention <[email protected]> Subject: Re: [geneontology/simple-annoton-editor] External Search for existing annotations (#41) Resent-From: <[email protected]> is this scheduled for 1.0? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_geneontology_simple-2Dannoton-2Deditor_issues_41-23issuecomment-2D372476909&d=DwMCaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=33hhNKh7WpvJRiaXHf366Q&m=7qza5HEeWGPzTjU0rszp_vxrWrLbp0CGa9JQKv0re9c&s=G5QugsCMvK7yEuzeYsqT9th9SzqvIBP2AnmitNqSU84&e=>, or mute the thread<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_ALaXeMfRlkgJ39VrD-2DXt59rAy-5FsE45iEks5tdu-2DkgaJpZM4SnvXy&d=DwMCaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=33hhNKh7WpvJRiaXHf366Q&m=7qza5HEeWGPzTjU0rszp_vxrWrLbp0CGa9JQKv0re9c&s=zqyyDdbz76qHHPu65pMqGoXrfnQHzjgW4qjVFOEWkb0&e=>.

[thomaspd]

The major use case is for curators trying to create a larger "pathway" or other model, using annotations that are already in the GO database. This was in the original spec Huaiyu and I drew up years ago, and multiple curation groups asked for this functionality during the Noctua demos at EBI and the Corvallis meeting. UCL was waiting for this functionality before creating larger models for SynGO.

[tmushayahama]

@cmungall @kltm from the earlier conversation about groups,

1. Is there a way to attribute (providedBy) on each evidence node when a user is using annotations that are already in the GO database?
2. If(1) then how do I easily get the uri from the group shorthand?

[kltm]

This sounds like:
geneontology/noctua#539 (comment)
geneontology/noctua#458 (comment)

I believe the current function companion technically accomplishes your 1 (and maybe 2), but I think we want to revisit if that is really what we want to do. As well, we should not have independent implementations of this translation.

[vanaukenk]

Also see: #78