Biological Process GO terms displayed with GO-CAMs not following part_of chains (Alliance KANBAN-126)

[kltm]

Shadowing for our accounting: https://agr-jira.atlassian.net/browse/KANBAN-126

[kltm]

Tagging @vanaukenk @tmushayahama @dustine32

[dustine32]

@vanaukenk Using example model epidermal growth factor receptor signaling pathway via MAPK cascade (C. elegans) and concentrating on GP let-60 here:

This GP is currently only displayed in the pathway widget right-side pane under its directly-connected process, "Ras protein signal transduction":

Sounds like this GP should really be added under BP GO:0005006 "epidermal growth factor receptor signaling pathway via MAPK cascade", which it's indirectly-connected to via the part_of chain:

Two questions:

1. Should the above arrow represent a copy or a move of let-60 into the indirectly-connected BP GO:0005006 "epidermal growth factor receptor signaling pathway via MAPK cascade"?
2. If all GPs in this model are all indirectly connected to GO:0005006, should GO:0005006 be the only BP grouping in the pathway widget right-side pane?

[kltm]

@tmushayahama Has this work underway.

[vanaukenk]

Needs testing on noctua-dev Alliance Pathway Preview workbench
@vanaukenk @ukemi

[vanaukenk]

It's been a while, but we should review this ticket in the context of work on the right-hand panel to make sure we're happy with the display.