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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>groupId</groupId>
<artifactId>biosequence</artifactId>
<version>1.0-SNAPSHOT</version>
<properties>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<dependencies>
<dependency>
<groupId>org.grapheco.pandadb</groupId>
<artifactId>pandadb-java-driver</artifactId>
<version>0.4.7-SNAPSHOT-20240411</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>org.grapheco</groupId>-->
<!-- <artifactId>lynx-rpcplus</artifactId>-->
<!-- <version>0.1.0-SNAPSHOT-20240110</version>-->
<!-- </dependency>-->
<!-- <dependency>-->
<!-- <groupId>org.grapheco</groupId>-->
<!-- <artifactId>lynx-cypherplus</artifactId>-->
<!-- <version>0.1-SNAPSHOT-20240110</version>-->
<!-- </dependency>-->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-core</artifactId>
<version>6.1.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.biojava/biojava-alignment -->
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-alignment</artifactId>
<version>6.1.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.biojava/biojava-phylo -->
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-phylo</artifactId>
<version>4.2.12</version>
<exclusions>
<exclusion>
<groupId>org.biojava.thirdparty</groupId>
<artifactId>forester</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- https://mvnrepository.com/artifact/org.biojava.thirdparty/forester -->
<dependency>
<groupId>org.biojava.thirdparty</groupId>
<artifactId>forester</artifactId>
<version>1.039</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.biojava/biojava-genome -->
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-genome</artifactId>
<version>6.1.0</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.biojava/sequencing -->
<dependency>
<groupId>org.biojava</groupId>
<artifactId>sequencing</artifactId>
<version>1.9.7</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.github.samtools/htsjdk -->
<dependency>
<groupId>com.github.samtools</groupId>
<artifactId>htsjdk</artifactId>
<version>3.0.5</version>
</dependency>
<dependency>
<groupId>org.grapheco</groupId>
<artifactId>lynx</artifactId>
<version>0.6.6</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>org.grapheco</groupId>-->
<!-- <artifactId>plugin</artifactId>-->
<!-- <version>0.5.0-alpha</version>-->
<!-- </dependency>-->
<dependency>
<groupId>org.grapheco</groupId>
<artifactId>pandadb-plugin</artifactId>
<version>0.5.0-alpha</version>
</dependency>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
<version>2.12.8</version>
</dependency>
</dependencies>
</project>