From 176ecf2ae867359b47dda80bea3f1a2f90dee19b Mon Sep 17 00:00:00 2001 From: Dorian Morrissey Date: Tue, 31 Aug 2021 13:21:04 -0500 Subject: [PATCH 1/4] corrected spelling error in generate_tsvs.rb, created tsv generator and presentor, scheduled the task to run monthly, added functions to get uniprot names and created the uniprotmapping tsv. --- app/jobs/generate_tsvs.rb | 4 +- app/jobs/generate_uniprot_mapping_tsv.rb | 54 +++ .../uniprot_mapping_tsv_presenter.rb | 34 ++ config/scheduled_tasks.yml | 6 + lib/scrapers/my_gene_info.rb | 19 + public/downloads/UniprotMapping.tsv | 455 ++++++++++++++++++ 6 files changed, 570 insertions(+), 2 deletions(-) create mode 100644 app/jobs/generate_uniprot_mapping_tsv.rb create mode 100644 app/presenters/uniprot_mapping_tsv_presenter.rb create mode 100644 public/downloads/UniprotMapping.tsv diff --git a/app/jobs/generate_tsvs.rb b/app/jobs/generate_tsvs.rb index f513234c..d7e02568 100644 --- a/app/jobs/generate_tsvs.rb +++ b/app/jobs/generate_tsvs.rb @@ -32,8 +32,8 @@ def ensure_downloads_directory_exists end def public_file_path(filename) - desination_filename = [filename_prefix, filename].join('-') - File.join(downloads_dir_path, desination_filename) + destination_filename = [filename_prefix, filename].join('-') + File.join(downloads_dir_path, destination_filename) end def downloads_dir_path diff --git a/app/jobs/generate_uniprot_mapping_tsv.rb b/app/jobs/generate_uniprot_mapping_tsv.rb new file mode 100644 index 00000000..9bea3542 --- /dev/null +++ b/app/jobs/generate_uniprot_mapping_tsv.rb @@ -0,0 +1,54 @@ +class GenerateUniprotMappingTsv < GenerateTsvs + def perform + ensure_downloads_directory_exists + tsvs_to_generate.each do |e| + begin + tmp_file = tmp_file(e.file_name) + tmp_file.puts(e.headers.join("\t")) + + e.objects.find_each do |object| + + row = e.row_from_object(object) + if row[1].is_a?(Array) + overview_col = e.formatted_overview_col(object) + row[1].each do |r| + new_row = [row[0], r, overview_col].join("\t") + tmp_file.puts(new_row) + end + elsif row[1] == "N/A" + next + else + tmp_file.puts(row.join("\t")) + end + end + + tmp_file.close + public_path = public_file_path(e.file_name) + FileUtils.cp(tmp_file.path, public_path) + File.chmod(0644, public_path) + ensure + tmp_file.unlink + end + end + end + + def tsvs_to_generate + [UniprotMappingTsvPresenter] + end + + def public_file_path(filename) + File.join(downloads_dir_path, filename) + end + + def downloads_dir_path + TsvRelease.downloads_path + end + + def release_path + '' + end + + def filename_prefix + '' + end + end \ No newline at end of file diff --git a/app/presenters/uniprot_mapping_tsv_presenter.rb b/app/presenters/uniprot_mapping_tsv_presenter.rb new file mode 100644 index 00000000..2d8a8fe9 --- /dev/null +++ b/app/presenters/uniprot_mapping_tsv_presenter.rb @@ -0,0 +1,34 @@ +class UniprotMappingTsvPresenter + def self.objects + Gene.joins(variants: :evidence_items).where("variants.evidence_items.status!='rejected'").distinct + end + + def self.headers + [ + 'civic_name', + 'uniprot_name', + 'gene_overview' + ] + end + + def self.row_from_object(gene) + [ + gene.name, + Scrapers::MyGeneInfo.get_swissprot_name(gene), + formatted_overview_col(gene) + ] + end + + def self.file_name + "UniprotMapping.tsv" + end + + def self.formatted_overview_col(gene) + + eid_count = 0 + gene.variants.each do |vs| + eid_count += vs.evidence_items.size + end + "#{gene.assertions.size} clinical assertion(s) and #{eid_count} evidence item(s) for #{gene.variants.size} variant(s) curated from #{gene.sources.size} published source(s)" + end + end \ No newline at end of file diff --git a/config/scheduled_tasks.yml b/config/scheduled_tasks.yml index 9f720f33..42f097b1 100644 --- a/config/scheduled_tasks.yml +++ b/config/scheduled_tasks.yml @@ -52,6 +52,12 @@ GenerateMonthlyTsvs: queue: default class: GenerateMonthlyTsvs +GenerateUniprotMappingTsv: + cron: '0 0 1 * *' + description: Update the UniprotMapping tsv + queue: default + class: GenerateUniprotMappingTsv + GenerateNightlyTsvs: cron: '0 0 * * *' description: Update the nightly TSV dumps diff --git a/lib/scrapers/my_gene_info.rb b/lib/scrapers/my_gene_info.rb index 39cb1d9d..4716c27e 100644 --- a/lib/scrapers/my_gene_info.rb +++ b/lib/scrapers/my_gene_info.rb @@ -36,5 +36,24 @@ def self.extract_entrez_id(data) def self.extract_official_name(data) data['hits'].first['name'] end + + private + def self.url_for_uniprot(gene_symbol) + "http://mygene.info/v2/query/?q=symbol:#{gene_symbol}&species=human&entrezonly=1&limit=1&fields=uniprot" + end + + def self.get_swissprot_name(gene) + resp = Util.make_get_request(url_for_uniprot(gene.name)) + data = JSON.parse(resp) + extract_swissprot_name(data) + end + + def self.extract_swissprot_name(data) + if data['hits'].first != nil and data['hits'].first['uniprot'] != nil + data['hits'].first['uniprot']['Swiss-Prot'] + else + 'N/A' + end + end end end diff --git a/public/downloads/UniprotMapping.tsv b/public/downloads/UniprotMapping.tsv new file mode 100644 index 00000000..0afba51c --- /dev/null +++ b/public/downloads/UniprotMapping.tsv @@ -0,0 +1,455 @@ +civic_name uniprot_name gene_overview +ALK Q9UM73 2 clinical assertion(s) and 220 evidence item(s) for 54 variant(s) curated from 2 published source(s) +AKT1 P31749 0 clinical assertion(s) and 11 evidence item(s) for 7 variant(s) curated from 2 published source(s) +ARAF P10398 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 2 published source(s) +ABL1 P00519 1 clinical assertion(s) and 554 evidence item(s) for 126 variant(s) curated from 2 published source(s) +BRAF P15056 10 clinical assertion(s) and 413 evidence item(s) for 115 variant(s) curated from 3 published source(s) +BRCA1 P38398 0 clinical assertion(s) and 44 evidence item(s) for 22 variant(s) curated from 2 published source(s) +BRCA2 P51587 0 clinical assertion(s) and 50 evidence item(s) for 14 variant(s) curated from 2 published source(s) +CCND1 P24385 0 clinical assertion(s) and 20 evidence item(s) for 3 variant(s) curated from 2 published source(s) +CCND2 P30279 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 2 published source(s) +CCND3 P30281 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 2 published source(s) +CCNE1 P24864 0 clinical assertion(s) and 12 evidence item(s) for 3 variant(s) curated from 1 published source(s) +CDK6 Q00534 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 2 published source(s) +CDK4 P11802 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 2 published source(s) +CDKN2A P42771 0 clinical assertion(s) and 47 evidence item(s) for 22 variant(s) curated from 9 published source(s) +CDKN2A Q8N726 0 clinical assertion(s) and 47 evidence item(s) for 22 variant(s) curated from 9 published source(s) +CEBPA P49715 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 3 published source(s) +PRKACA P17612 1 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 2 published source(s) +DNMT3A Q9Y6K1 0 clinical assertion(s) and 38 evidence item(s) for 8 variant(s) curated from 2 published source(s) +EGFR P00533 2 clinical assertion(s) and 498 evidence item(s) for 245 variant(s) curated from 3 published source(s) +ERBB2 P04626 3 clinical assertion(s) and 164 evidence item(s) for 46 variant(s) curated from 3 published source(s) +ESR1 P03372 0 clinical assertion(s) and 22 evidence item(s) for 9 variant(s) curated from 2 published source(s) +FGFR2 P21802 0 clinical assertion(s) and 46 evidence item(s) for 19 variant(s) curated from 2 published source(s) +FGFR3 P22607 1 clinical assertion(s) and 66 evidence item(s) for 20 variant(s) curated from 2 published source(s) +FLT3 P36888 7 clinical assertion(s) and 176 evidence item(s) for 53 variant(s) curated from 2 published source(s) +GATA2 P23769 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 2 published source(s) +IDH1 O75874 0 clinical assertion(s) and 51 evidence item(s) for 9 variant(s) curated from 2 published source(s) +IDH2 P48735 0 clinical assertion(s) and 21 evidence item(s) for 4 variant(s) curated from 3 published source(s) +JAK2 O60674 0 clinical assertion(s) and 47 evidence item(s) for 25 variant(s) curated from 1 published source(s) +KIT P10721 0 clinical assertion(s) and 279 evidence item(s) for 100 variant(s) curated from 1 published source(s) +KRAS P01116 0 clinical assertion(s) and 418 evidence item(s) for 46 variant(s) curated from 1 published source(s) +MAP2K1 Q02750 0 clinical assertion(s) and 25 evidence item(s) for 18 variant(s) curated from 1 published source(s) +MEF2D Q14814 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CSF1R P07333 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 0 published source(s) +MGMT P16455 0 clinical assertion(s) and 14 evidence item(s) for 4 variant(s) curated from 0 published source(s) +NPM1 P06748 0 clinical assertion(s) and 36 evidence item(s) for 3 variant(s) curated from 2 published source(s) +NRAS P01111 0 clinical assertion(s) and 109 evidence item(s) for 19 variant(s) curated from 0 published source(s) +PIK3CA P42336 1 clinical assertion(s) and 192 evidence item(s) for 73 variant(s) curated from 0 published source(s) +PDGFRA P16234 0 clinical assertion(s) and 58 evidence item(s) for 32 variant(s) curated from 2 published source(s) +PML P29590 1 clinical assertion(s) and 12 evidence item(s) for 7 variant(s) curated from 2 published source(s) +PTEN P60484 0 clinical assertion(s) and 79 evidence item(s) for 22 variant(s) curated from 2 published source(s) +RET P07949 0 clinical assertion(s) and 51 evidence item(s) for 18 variant(s) curated from 2 published source(s) +RUNX1 Q01196 0 clinical assertion(s) and 19 evidence item(s) for 13 variant(s) curated from 1 published source(s) +SF3B1 O75533 0 clinical assertion(s) and 9 evidence item(s) for 3 variant(s) curated from 3 published source(s) +TP53 P04637 0 clinical assertion(s) and 225 evidence item(s) for 161 variant(s) curated from 1 published source(s) +TSC1 Q92574 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 0 published source(s) +TSC2 P49815 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +U2AF1 P0DN76 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 2 published source(s) +U2AF1 Q01081 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 2 published source(s) +WT1 P19544 0 clinical assertion(s) and 12 evidence item(s) for 3 variant(s) curated from 0 published source(s) +NOTCH1 P46531 0 clinical assertion(s) and 25 evidence item(s) for 29 variant(s) curated from 3 published source(s) +DDR2 Q16832 0 clinical assertion(s) and 7 evidence item(s) for 7 variant(s) curated from 0 published source(s) +MET P08581 0 clinical assertion(s) and 62 evidence item(s) for 19 variant(s) curated from 1 published source(s) +FLI1 Q01543 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +EWSR1 Q01844 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 2 published source(s) +TET2 Q6N021 0 clinical assertion(s) and 6 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FOXP1 Q9H334 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +REL Q04864 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +VHL P40337 6 clinical assertion(s) and 2399 evidence item(s) for 709 variant(s) curated from 4 published source(s) +BCL2 P10415 0 clinical assertion(s) and 29 evidence item(s) for 16 variant(s) curated from 0 published source(s) +IGF2 P01344 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AURKA O14965 0 clinical assertion(s) and 7 evidence item(s) for 3 variant(s) curated from 0 published source(s) +PBRM1 Q86U86 0 clinical assertion(s) and 8 evidence item(s) for 2 variant(s) curated from 0 published source(s) +EZH2 Q15910 0 clinical assertion(s) and 23 evidence item(s) for 10 variant(s) curated from 0 published source(s) +KMT2D O14686 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +BTK Q06187 0 clinical assertion(s) and 5 evidence item(s) for 4 variant(s) curated from 0 published source(s) +APC P25054 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AR P10275 0 clinical assertion(s) and 20 evidence item(s) for 10 variant(s) curated from 0 published source(s) +ASXL1 Q8IXJ9 0 clinical assertion(s) and 8 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ATM Q13315 0 clinical assertion(s) and 46 evidence item(s) for 35 variant(s) curated from 2 published source(s) +BAP1 Q92560 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 1 published source(s) +ERG P11308 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +FOXL2 P58012 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +IKZF1 Q13422 1 clinical assertion(s) and 19 evidence item(s) for 3 variant(s) curated from 0 published source(s) +NCOA3 Q9Y6Q9 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +PAX8 Q06710 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 3 published source(s) +PGR P06401 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) +SMAD4 Q13485 0 clinical assertion(s) and 19 evidence item(s) for 11 variant(s) curated from 0 published source(s) +SMARCA4 P51532 0 clinical assertion(s) and 12 evidence item(s) for 4 variant(s) curated from 0 published source(s) +TERT O14746 0 clinical assertion(s) and 16 evidence item(s) for 6 variant(s) curated from 0 published source(s) +TTF1 Q15361 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ABL2 P42684 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ACTA1 P68133 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ACTL6A O96019 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ACVR1 Q04771 1 clinical assertion(s) and 9 evidence item(s) for 6 variant(s) curated from 0 published source(s) +PARP1 P09874 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AEBP1 Q8IUX7 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AKT2 P31751 0 clinical assertion(s) and 2 evidence item(s) for 3 variant(s) curated from 0 published source(s) +ALCAM Q13740 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +BIRC3 Q13489 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +BIRC5 O15392 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +AREG P15514 0 clinical assertion(s) and 6 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RHOA P61586 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ASCL1 P50553 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ASNS P08243 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ASS1 P00966 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ATR Q13535 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ATRX P46100 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 0 published source(s) +AXL P30530 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +B2M P61769 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +BARD1 Q99728 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +TNFRSF17 Q02223 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CEACAM1 P13688 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +PRDM1 O75626 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +BLK P51451 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CALR P27797 0 clinical assertion(s) and 8 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CASP8 Q14790 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CBFA2T3 O75081 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CBFB Q13951 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 2 published source(s) +CBL P22681 0 clinical assertion(s) and 8 evidence item(s) for 7 variant(s) curated from 0 published source(s) +CBLB Q13191 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CD44 P16070 1 clinical assertion(s) and 17 evidence item(s) for 9 variant(s) curated from 0 published source(s) +CD79B P40259 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDH1 P12830 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDK2 P24941 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDK5 Q00535 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDK9 P50750 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDKN1A P38936 0 clinical assertion(s) and 4 evidence item(s) for 4 variant(s) curated from 0 published source(s) +CDKN1B P46527 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CDKN2B P42772 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CDX2 Q99626 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CHEK1 O14757 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CREBBP Q92793 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CRKL P46109 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CSF1 P09603 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CSF3R Q99062 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CTAG1B P78358 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CTLA4 P16410 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CTNNB1 P35222 1 clinical assertion(s) and 32 evidence item(s) for 13 variant(s) curated from 0 published source(s) +CYP2D6 P10635 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DBI P07108 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DCC P43146 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +GADD45A P24522 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DDIT3 P35638 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +DEFA1 P59665 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NQO1 P15559 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +DNMT1 P26358 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DPYD Q12882 0 clinical assertion(s) and 4 evidence item(s) for 4 variant(s) curated from 0 published source(s) +DRD5 P21918 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DUSP6 Q16828 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EFNA2 O43921 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EGF P01133 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EIF1AX P47813 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EIF4EBP1 Q13541 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EP300 Q09472 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +EPAS1 Q99814 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EPHB2 P29323 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +EPHB4 P54760 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EPOR P19235 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ERBB3 P21860 0 clinical assertion(s) and 16 evidence item(s) for 15 variant(s) curated from 0 published source(s) +ERBB4 Q15303 0 clinical assertion(s) and 6 evidence item(s) for 4 variant(s) curated from 3 published source(s) +ERCC1 P07992 0 clinical assertion(s) and 9 evidence item(s) for 3 variant(s) curated from 0 published source(s) +ERCC2 P18074 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 3 published source(s) +EREG O14944 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ERCC5 P28715 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ETS2 P15036 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ETV1 P50549 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ETV4 P43268 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ETV5 P41161 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ETV6 P41212 0 clinical assertion(s) and 7 evidence item(s) for 6 variant(s) curated from 0 published source(s) +MECOM Q03112 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MECOM Q13465 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FANCA O15360 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FANCC Q00597 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTK2B Q14289 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +FCGR2A P12318 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FCGR2B P31994 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FCGR2B P31995 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FCGR3A P08637 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FGF2 P09038 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FGF3 P11487 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 2 published source(s) +FGF13 Q92913 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FGFR1 P11362 0 clinical assertion(s) and 45 evidence item(s) for 11 variant(s) curated from 8 published source(s) +FGFR4 P22455 0 clinical assertion(s) and 9 evidence item(s) for 5 variant(s) curated from 0 published source(s) +FOXF1 Q12946 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FOXC2 Q99958 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FOXO1 Q12778 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +FOXO3 O43524 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FLT4 P35916 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FNTB P49356 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FOS P01100 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MTOR P42345 0 clinical assertion(s) and 30 evidence item(s) for 21 variant(s) curated from 3 published source(s) +GAS6 Q14393 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +GATA1 P15976 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +B4GALT1 P15291 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +GLI1 P08151 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +GNA11 P29992 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 0 published source(s) +GNAQ P50148 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 0 published source(s) +GNAS O95467 0 clinical assertion(s) and 13 evidence item(s) for 4 variant(s) curated from 0 published source(s) +GNAS P63092 0 clinical assertion(s) and 13 evidence item(s) for 4 variant(s) curated from 0 published source(s) +GNAS P84996 0 clinical assertion(s) and 13 evidence item(s) for 4 variant(s) curated from 0 published source(s) +GNAS Q5JWF2 0 clinical assertion(s) and 13 evidence item(s) for 4 variant(s) curated from 0 published source(s) +ARHGAP35 Q9NRY4 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +GSTP1 P09211 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MSH6 P52701 0 clinical assertion(s) and 7 evidence item(s) for 7 variant(s) curated from 0 published source(s) +HDAC2 Q92769 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +HGF P14210 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NRG1 Q02297 0 clinical assertion(s) and 24 evidence item(s) for 8 variant(s) curated from 0 published source(s) +HIF1A Q16665 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) +HLA-C P10321 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HLA-DRA P01903 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HMOX1 P09601 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HOXD8 P13378 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HRAS P01112 0 clinical assertion(s) and 16 evidence item(s) for 10 variant(s) curated from 0 published source(s) +HSPA5 P11021 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HSPB1 P04792 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TNC P24821 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +IGF1R P08069 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) +IL2RB P14784 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +IL6 P05231 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +IL7R P16871 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) +CXCL10 P02778 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +JAK1 P23458 0 clinical assertion(s) and 7 evidence item(s) for 6 variant(s) curated from 0 published source(s) +JAK3 P52333 0 clinical assertion(s) and 3 evidence item(s) for 8 variant(s) curated from 0 published source(s) +JUN P05412 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +KDR P35968 0 clinical assertion(s) and 7 evidence item(s) for 6 variant(s) curated from 0 published source(s) +KRT18 P05783 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +LAG3 P18627 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STMN1 P16949 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +LEPR P48357 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +LYN P07948 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +TACSTD2 P09758 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EPCAM P16422 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MDM2 Q00987 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 0 published source(s) +MDM4 O15151 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MEN1 O00255 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MITF O75030 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MKI67 P46013 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MLH1 P40692 0 clinical assertion(s) and 29 evidence item(s) for 29 variant(s) curated from 0 published source(s) +KMT2A Q03164 3 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) +MMP2 P08253 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MMP9 P14780 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MN1 Q10571 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MPL P40238 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MSH2 P43246 0 clinical assertion(s) and 7 evidence item(s) for 7 variant(s) curated from 0 published source(s) +MSH3 P20585 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MTAP Q13126 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MTHFR P42898 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MYB P10242 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MYC P01106 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MYCL P12524 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MYCN P04198 0 clinical assertion(s) and 9 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MYD88 Q99836 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MYOD1 P15172 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +NBN O60934 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NEDD9 Q14511 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NF1 P21359 0 clinical assertion(s) and 16 evidence item(s) for 4 variant(s) curated from 0 published source(s) +NF2 P35240 0 clinical assertion(s) and 6 evidence item(s) for 5 variant(s) curated from 0 published source(s) +NFE2L2 Q16236 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) +NOTCH3 Q9UM47 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NT5E P21589 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NTRK1 P04629 1 clinical assertion(s) and 43 evidence item(s) for 19 variant(s) curated from 0 published source(s) +NTRK2 Q16620 0 clinical assertion(s) and 9 evidence item(s) for 6 variant(s) curated from 0 published source(s) +NTRK3 Q16288 1 clinical assertion(s) and 29 evidence item(s) for 10 variant(s) curated from 0 published source(s) +NUP98 P52948 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +PAX5 Q02548 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PCNA P12004 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PDGFB P01127 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PDGFRB P09619 1 clinical assertion(s) and 14 evidence item(s) for 5 variant(s) curated from 0 published source(s) +ABCB1 P08183 0 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) +PIK3CB P42338 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PIM1 P11309 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PIK3R1 P27986 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PIK3R2 O00459 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) +PLCG2 P16885 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PLK1 P53350 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PMS2 P54278 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +POLD1 P28340 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) +POLE Q07864 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 0 published source(s) +POU5F1 Q01860 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PPP2R1A P30153 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PRKAA2 P54646 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PRKAR1A P10644 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PRKCB P05771 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MAPK1 P28482 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) +MAP2K2 P36507 0 clinical assertion(s) and 9 evidence item(s) for 8 variant(s) curated from 0 published source(s) +MAP2K7 O14733 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PRPS1 P60891 0 clinical assertion(s) and 45 evidence item(s) for 21 variant(s) curated from 0 published source(s) +PSMB8 P28062 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PSMD4 P55036 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +PTCH1 Q13635 0 clinical assertion(s) and 8 evidence item(s) for 7 variant(s) curated from 0 published source(s) +PTGS2 P35354 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTPN6 P29350 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTPN11 Q06124 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) +PTPN12 Q05209 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTPRB P23467 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTPRD P23468 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +PTPRF P10586 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RAC1 P63000 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 1 published source(s) +RAD23B P54727 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RAD51D O75771 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RAF1 P04049 0 clinical assertion(s) and 5 evidence item(s) for 3 variant(s) curated from 0 published source(s) +RASA1 P20936 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RB1 P06400 0 clinical assertion(s) and 9 evidence item(s) for 7 variant(s) curated from 0 published source(s) +RELA Q04206 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RHEB Q15382 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RIT1 Q92963 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ROS1 P08922 1 clinical assertion(s) and 43 evidence item(s) for 15 variant(s) curated from 4 published source(s) +RPS6 P62753 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RRM1 P23921 0 clinical assertion(s) and 10 evidence item(s) for 2 variant(s) curated from 0 published source(s) +RRM2 P31350 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SCN8A Q9UQD0 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CX3CL1 P78423 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SDHA P31040 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SDHB P21912 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +SRSF2 Q01130 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SGK1 O00141 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SMARCB1 Q12824 1 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 0 published source(s) +SMO Q99835 0 clinical assertion(s) and 35 evidence item(s) for 18 variant(s) curated from 0 published source(s) +SOX10 P56693 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SSX1 Q16384 0 clinical assertion(s) and 7 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SSX2 Q16385 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SSX4 O60224 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STAT1 P42224 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STAT3 P40763 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STAT5B P51692 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STAT6 P42226 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SULT1E1 P49888 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STK11 Q15831 0 clinical assertion(s) and 21 evidence item(s) for 7 variant(s) curated from 0 published source(s) +SYK P43405 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ZEB1 P37275 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) +TCF19 Q9Y242 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TEK Q02763 0 clinical assertion(s) and 6 evidence item(s) for 5 variant(s) curated from 0 published source(s) +NR2F2 P24468 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TFF3 Q07654 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TGFA P01135 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TGFBR3 Q03167 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +THBS2 P35442 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TIMP1 P01033 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TMPRSS2 O15393 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TOP1 P11387 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +TOP2A P11388 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TP53BP1 Q12888 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TPT1 P13693 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TSPYL1 Q9H0U9 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TYK2 P29597 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TYMS P04818 0 clinical assertion(s) and 8 evidence item(s) for 5 variant(s) curated from 0 published source(s) +KDM6A O15550 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +VEGFA P15692 0 clinical assertion(s) and 15 evidence item(s) for 7 variant(s) curated from 0 published source(s) +VEGFC P49767 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +WEE1 P30291 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +WNT11 O96014 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +XRCC1 P18887 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CXCR4 P61073 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DEK P35659 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HMGA2 P52926 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +LZTR1 Q8N653 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ZRSR2 Q15696 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +KDM5C P41229 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ARID1A O14497 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 0 published source(s) +SPOP O43791 0 clinical assertion(s) and 9 evidence item(s) for 9 variant(s) curated from 0 published source(s) +IRS2 Q9Y4H2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ABCC3 O15438 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CFLAR O15519 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PROM1 O43490 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ALDH1A2 O94788 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +SPHK1 Q9NYA1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FUBP1 Q96AE4 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MBD4 O95243 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTTG1 O95997 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +KLF4 O43474 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ABCG2 Q9UNQ0 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +KIF23 Q02241 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HDAC9 Q9UKV0 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CUL7 Q14999 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FGF19 O95750 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) +AKT3 Q9Y243 0 clinical assertion(s) and 5 evidence item(s) for 6 variant(s) curated from 0 published source(s) +BCL2L11 O43521 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SH2B3 Q9UQQ2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RAD50 Q92878 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SPRY2 O43597 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MAEA Q7L5Y9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TUBB3 Q13509 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +YAP1 P46937 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MERTK Q12866 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HOXB13 Q92826 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NCOA2 Q15596 1 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) +AGR2 O95994 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SLCO1B1 Q9Y6L6 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CTCF P49711 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +DLL3 Q9NYJ7 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STAG3 Q9UJ98 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +STAG2 Q8N3U4 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 0 published source(s) +HSPH1 Q92598 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +TLK2 Q86UE8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTPRT O14522 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PTP4A3 O75365 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CHEK2 O96017 0 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) +RRAS2 P62070 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ZHX2 Q9Y6X8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DKK1 O94907 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NT5C2 P49902 0 clinical assertion(s) and 18 evidence item(s) for 6 variant(s) curated from 1 published source(s) +CIC Q96RK0 0 clinical assertion(s) and 11 evidence item(s) for 3 variant(s) curated from 0 published source(s) +DICER1 Q9UPY3 0 clinical assertion(s) and 20 evidence item(s) for 12 variant(s) curated from 0 published source(s) +SIRT1 Q96EB6 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +BRD4 O60885 0 clinical assertion(s) and 6 evidence item(s) for 2 variant(s) curated from 0 published source(s) +CBLC Q9ULV8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PPP1R15A O75807 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +POT1 Q9NUX5 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +WWTR1 Q9GZV5 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SETBP1 Q9Y6X0 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) +PDCD4 Q53EL6 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MAGEH1 Q9H213 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DROSHA Q9NRR4 0 clinical assertion(s) and 1 evidence item(s) for 2 variant(s) curated from 0 published source(s) +TBK1 Q9UHD2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CD274 Q9NZQ7 0 clinical assertion(s) and 24 evidence item(s) for 1 variant(s) curated from 1 published source(s) +TLX3 O43711 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CTAG2 O75638 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FOXP3 Q9BZS1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CRBN Q96SW2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DDX41 Q9UJV9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SUFU Q9UMX1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDK12 Q9NYV4 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +RSF1 Q96T23 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +LRP1B Q9NZR2 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 3 published source(s) +ERRFI1 Q9UJM3 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ROBO4 Q8WZ75 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +UGT1A1 P22309 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +BCOR Q6W2J9 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +NUDT15 Q9NV35 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FBXW7 Q969H0 0 clinical assertion(s) and 12 evidence item(s) for 9 variant(s) curated from 0 published source(s) +DDX43 Q9NXZ2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CHD7 Q9P2D1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +WDR12 Q9GZL7 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PBK Q96KB5 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +POLE4 Q9NR33 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +KMT2C Q8NEZ4 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +PAPPA2 Q9BXP8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PBLD P30039 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CRLF2 Q9HC73 0 clinical assertion(s) and 18 evidence item(s) for 6 variant(s) curated from 0 published source(s) +RBM15 Q96T37 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +BIRC7 Q96CA5 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 1 published source(s) +PALB2 Q86YC2 0 clinical assertion(s) and 9 evidence item(s) for 5 variant(s) curated from 0 published source(s) +PREX2 Q70Z35 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PDCD1LG2 Q9BQ51 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NECTIN4 Q96NY8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CARD11 Q9BXL7 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +HAVCR2 Q8TDQ0 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ABCC10 Q5T3U5 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +IL33 O95760 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SLFN11 Q7Z7L1 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RCSD1 Q6JBY9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +NAPRT Q6XQN6 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +VPS37A Q8NEZ2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +PXDNL A1KZ92 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AMER1 Q5JTC6 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DGKH Q86XP1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ARID2 Q68CP9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FLCN Q8NFG4 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +RICTOR Q6R327 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RABL3 Q5HYI8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ATXN1L P0C7T5 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +ECSCR Q19T08 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +KLLN B2CW77 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DUX4 Q9UBX2 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) From 471f8d708ea7114398be05b1cc82a2648edd47f5 Mon Sep 17 00:00:00 2001 From: dorian Date: Thu, 9 Sep 2021 21:02:43 -0500 Subject: [PATCH 2/4] testing --- config/database.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/config/database.yml b/config/database.yml index 33ea5846..b5e0fc9e 100644 --- a/config/database.yml +++ b/config/database.yml @@ -7,6 +7,8 @@ default: &default development: <<: *default database: civic_development + username: civic-dev + password: Y0o_da3&! test: <<: *default From 3cb339316f2c894de8855e9d02028aa8d2768035 Mon Sep 17 00:00:00 2001 From: dorian Date: Fri, 10 Sep 2021 10:44:35 -0500 Subject: [PATCH 3/4] Implemented sugestions in pull request --- app/jobs/generate_uniprot_mapping_tsv.rb | 91 +++++----- .../uniprot_mapping_tsv_presenter.rb | 60 ++++--- public/downloads/UniprotMapping.tsv | 160 +++++++++--------- 3 files changed, 150 insertions(+), 161 deletions(-) diff --git a/app/jobs/generate_uniprot_mapping_tsv.rb b/app/jobs/generate_uniprot_mapping_tsv.rb index 9bea3542..ea5ec892 100644 --- a/app/jobs/generate_uniprot_mapping_tsv.rb +++ b/app/jobs/generate_uniprot_mapping_tsv.rb @@ -1,54 +1,45 @@ -class GenerateUniprotMappingTsv < GenerateTsvs - def perform - ensure_downloads_directory_exists - tsvs_to_generate.each do |e| - begin - tmp_file = tmp_file(e.file_name) - tmp_file.puts(e.headers.join("\t")) - - e.objects.find_each do |object| - - row = e.row_from_object(object) - if row[1].is_a?(Array) - overview_col = e.formatted_overview_col(object) - row[1].each do |r| - new_row = [row[0], r, overview_col].join("\t") - tmp_file.puts(new_row) - end - elsif row[1] == "N/A" - next - else - tmp_file.puts(row.join("\t")) - end - end - - tmp_file.close - public_path = public_file_path(e.file_name) - FileUtils.cp(tmp_file.path, public_path) - File.chmod(0644, public_path) - ensure - tmp_file.unlink +class GenerateUniprotMappingTsv < ApplicationJob + def perform + ensure_downloads_directory_exists + p = UniprotMappingTsvPresenter + begin + tmp_file = tmp_file(p.file_name) + tmp_file.puts(p.headers.join("\t")) + + Gene.joins(variants: :evidence_items).distinct.find_each do |gene| + rows = p.rows_from_object(gene) + + rows.each do |r| + tmp_file.puts(r.join("\t")) end end + tmp_file.close + public_path = public_file_path(p.file_name) + FileUtils.cp(tmp_file.path, public_path) + File.chmod(0644, public_path) + ensure + tmp_file.unlink end + end + + private + def tmp_file(filename) + Tempfile.new(filename, File.join(Rails.root, 'tmp')) + end + + def ensure_downloads_directory_exists + FileUtils.mkdir_p(downloads_dir_path) + end - def tsvs_to_generate - [UniprotMappingTsvPresenter] - end - - def public_file_path(filename) - File.join(downloads_dir_path, filename) - end - - def downloads_dir_path - TsvRelease.downloads_path - end - - def release_path - '' - end - - def filename_prefix - '' - end - end \ No newline at end of file + def tsvs_to_generate + [UniprotMappingTsvPresenter] + end + + def public_file_path(filename) + File.join(downloads_dir_path, filename) + end + + def downloads_dir_path + TsvRelease.downloads_path + end +end \ No newline at end of file diff --git a/app/presenters/uniprot_mapping_tsv_presenter.rb b/app/presenters/uniprot_mapping_tsv_presenter.rb index 2d8a8fe9..6860153d 100644 --- a/app/presenters/uniprot_mapping_tsv_presenter.rb +++ b/app/presenters/uniprot_mapping_tsv_presenter.rb @@ -1,34 +1,32 @@ class UniprotMappingTsvPresenter - def self.objects - Gene.joins(variants: :evidence_items).where("variants.evidence_items.status!='rejected'").distinct - end + def self.headers + [ + 'civic_name', + 'uniprot_name', + 'gene_overview' + ] + end - def self.headers - [ - 'civic_name', - 'uniprot_name', - 'gene_overview' - ] - end - - def self.row_from_object(gene) - [ - gene.name, - Scrapers::MyGeneInfo.get_swissprot_name(gene), - formatted_overview_col(gene) - ] - end - - def self.file_name - "UniprotMapping.tsv" - end - - def self.formatted_overview_col(gene) - - eid_count = 0 - gene.variants.each do |vs| - eid_count += vs.evidence_items.size + def self.rows_from_object(gene) + swissprot_names = Array(Scrapers::MyGeneInfo.get_swissprot_name(gene)) + formatted_overview = formatted_overview_col(gene) + swissprot_names.map do |n| + if n == "N/A" + nil + else + [gene.name, n, formatted_overview] end - "#{gene.assertions.size} clinical assertion(s) and #{eid_count} evidence item(s) for #{gene.variants.size} variant(s) curated from #{gene.sources.size} published source(s)" - end - end \ No newline at end of file + end.compact + end + + def self.file_name + "UniprotMapping.tsv" + end + + def self.formatted_overview_col(gene) + eid_count = EvidenceItem.joins(variant: [:gene]).where("evidence_items.status != 'rejected'").where(variants: {gene: gene}).distinct.count + variant_count = gene.variants.joins(:evidence_items).where("evidence_items.status != 'rejected'").distinct.count + assertion_count = gene.assertions.where("status != 'rejected'").distinct.count + "#{assertion_count} clinical assertion(s) and #{eid_count} evidence item(s) for #{variant_count} variant(s) curated from #{gene.sources.size} published source(s)" + end +end diff --git a/public/downloads/UniprotMapping.tsv b/public/downloads/UniprotMapping.tsv index 0afba51c..c1df4996 100644 --- a/public/downloads/UniprotMapping.tsv +++ b/public/downloads/UniprotMapping.tsv @@ -1,83 +1,83 @@ civic_name uniprot_name gene_overview -ALK Q9UM73 2 clinical assertion(s) and 220 evidence item(s) for 54 variant(s) curated from 2 published source(s) -AKT1 P31749 0 clinical assertion(s) and 11 evidence item(s) for 7 variant(s) curated from 2 published source(s) +ALK Q9UM73 2 clinical assertion(s) and 211 evidence item(s) for 53 variant(s) curated from 2 published source(s) +AKT1 P31749 0 clinical assertion(s) and 11 evidence item(s) for 4 variant(s) curated from 2 published source(s) ARAF P10398 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 2 published source(s) -ABL1 P00519 1 clinical assertion(s) and 554 evidence item(s) for 126 variant(s) curated from 2 published source(s) -BRAF P15056 10 clinical assertion(s) and 413 evidence item(s) for 115 variant(s) curated from 3 published source(s) -BRCA1 P38398 0 clinical assertion(s) and 44 evidence item(s) for 22 variant(s) curated from 2 published source(s) -BRCA2 P51587 0 clinical assertion(s) and 50 evidence item(s) for 14 variant(s) curated from 2 published source(s) +ABL1 P00519 1 clinical assertion(s) and 527 evidence item(s) for 117 variant(s) curated from 2 published source(s) +BRAF P15056 8 clinical assertion(s) and 398 evidence item(s) for 108 variant(s) curated from 3 published source(s) +BRCA1 P38398 0 clinical assertion(s) and 40 evidence item(s) for 9 variant(s) curated from 2 published source(s) +BRCA2 P51587 0 clinical assertion(s) and 49 evidence item(s) for 12 variant(s) curated from 2 published source(s) CCND1 P24385 0 clinical assertion(s) and 20 evidence item(s) for 3 variant(s) curated from 2 published source(s) CCND2 P30279 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 2 published source(s) CCND3 P30281 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 2 published source(s) CCNE1 P24864 0 clinical assertion(s) and 12 evidence item(s) for 3 variant(s) curated from 1 published source(s) -CDK6 Q00534 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 2 published source(s) -CDK4 P11802 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 2 published source(s) -CDKN2A P42771 0 clinical assertion(s) and 47 evidence item(s) for 22 variant(s) curated from 9 published source(s) -CDKN2A Q8N726 0 clinical assertion(s) and 47 evidence item(s) for 22 variant(s) curated from 9 published source(s) +CDK6 Q00534 0 clinical assertion(s) and 5 evidence item(s) for 3 variant(s) curated from 2 published source(s) +CDK4 P11802 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 2 published source(s) +CDKN2A P42771 0 clinical assertion(s) and 45 evidence item(s) for 22 variant(s) curated from 9 published source(s) +CDKN2A Q8N726 0 clinical assertion(s) and 45 evidence item(s) for 22 variant(s) curated from 9 published source(s) CEBPA P49715 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 3 published source(s) PRKACA P17612 1 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 2 published source(s) -DNMT3A Q9Y6K1 0 clinical assertion(s) and 38 evidence item(s) for 8 variant(s) curated from 2 published source(s) -EGFR P00533 2 clinical assertion(s) and 498 evidence item(s) for 245 variant(s) curated from 3 published source(s) -ERBB2 P04626 3 clinical assertion(s) and 164 evidence item(s) for 46 variant(s) curated from 3 published source(s) +DNMT3A Q9Y6K1 0 clinical assertion(s) and 37 evidence item(s) for 4 variant(s) curated from 2 published source(s) +EGFR P00533 2 clinical assertion(s) and 488 evidence item(s) for 156 variant(s) curated from 3 published source(s) +ERBB2 P04626 2 clinical assertion(s) and 161 evidence item(s) for 43 variant(s) curated from 3 published source(s) ESR1 P03372 0 clinical assertion(s) and 22 evidence item(s) for 9 variant(s) curated from 2 published source(s) FGFR2 P21802 0 clinical assertion(s) and 46 evidence item(s) for 19 variant(s) curated from 2 published source(s) -FGFR3 P22607 1 clinical assertion(s) and 66 evidence item(s) for 20 variant(s) curated from 2 published source(s) -FLT3 P36888 7 clinical assertion(s) and 176 evidence item(s) for 53 variant(s) curated from 2 published source(s) +FGFR3 P22607 1 clinical assertion(s) and 61 evidence item(s) for 20 variant(s) curated from 2 published source(s) +FLT3 P36888 6 clinical assertion(s) and 172 evidence item(s) for 51 variant(s) curated from 2 published source(s) GATA2 P23769 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 2 published source(s) -IDH1 O75874 0 clinical assertion(s) and 51 evidence item(s) for 9 variant(s) curated from 2 published source(s) -IDH2 P48735 0 clinical assertion(s) and 21 evidence item(s) for 4 variant(s) curated from 3 published source(s) -JAK2 O60674 0 clinical assertion(s) and 47 evidence item(s) for 25 variant(s) curated from 1 published source(s) -KIT P10721 0 clinical assertion(s) and 279 evidence item(s) for 100 variant(s) curated from 1 published source(s) -KRAS P01116 0 clinical assertion(s) and 418 evidence item(s) for 46 variant(s) curated from 1 published source(s) +IDH1 O75874 0 clinical assertion(s) and 46 evidence item(s) for 7 variant(s) curated from 2 published source(s) +IDH2 P48735 0 clinical assertion(s) and 19 evidence item(s) for 4 variant(s) curated from 3 published source(s) +JAK2 O60674 0 clinical assertion(s) and 46 evidence item(s) for 25 variant(s) curated from 1 published source(s) +KIT P10721 0 clinical assertion(s) and 273 evidence item(s) for 92 variant(s) curated from 1 published source(s) +KRAS P01116 0 clinical assertion(s) and 407 evidence item(s) for 40 variant(s) curated from 1 published source(s) MAP2K1 Q02750 0 clinical assertion(s) and 25 evidence item(s) for 18 variant(s) curated from 1 published source(s) MEF2D Q14814 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -CSF1R P07333 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 0 published source(s) +CSF1R P07333 0 clinical assertion(s) and 7 evidence item(s) for 3 variant(s) curated from 0 published source(s) MGMT P16455 0 clinical assertion(s) and 14 evidence item(s) for 4 variant(s) curated from 0 published source(s) -NPM1 P06748 0 clinical assertion(s) and 36 evidence item(s) for 3 variant(s) curated from 2 published source(s) -NRAS P01111 0 clinical assertion(s) and 109 evidence item(s) for 19 variant(s) curated from 0 published source(s) -PIK3CA P42336 1 clinical assertion(s) and 192 evidence item(s) for 73 variant(s) curated from 0 published source(s) -PDGFRA P16234 0 clinical assertion(s) and 58 evidence item(s) for 32 variant(s) curated from 2 published source(s) +NPM1 P06748 0 clinical assertion(s) and 35 evidence item(s) for 3 variant(s) curated from 2 published source(s) +NRAS P01111 0 clinical assertion(s) and 87 evidence item(s) for 18 variant(s) curated from 0 published source(s) +PIK3CA P42336 0 clinical assertion(s) and 184 evidence item(s) for 43 variant(s) curated from 0 published source(s) +PDGFRA P16234 0 clinical assertion(s) and 57 evidence item(s) for 25 variant(s) curated from 2 published source(s) PML P29590 1 clinical assertion(s) and 12 evidence item(s) for 7 variant(s) curated from 2 published source(s) -PTEN P60484 0 clinical assertion(s) and 79 evidence item(s) for 22 variant(s) curated from 2 published source(s) +PTEN P60484 0 clinical assertion(s) and 77 evidence item(s) for 17 variant(s) curated from 2 published source(s) RET P07949 0 clinical assertion(s) and 51 evidence item(s) for 18 variant(s) curated from 2 published source(s) RUNX1 Q01196 0 clinical assertion(s) and 19 evidence item(s) for 13 variant(s) curated from 1 published source(s) SF3B1 O75533 0 clinical assertion(s) and 9 evidence item(s) for 3 variant(s) curated from 3 published source(s) -TP53 P04637 0 clinical assertion(s) and 225 evidence item(s) for 161 variant(s) curated from 1 published source(s) +TP53 P04637 0 clinical assertion(s) and 225 evidence item(s) for 104 variant(s) curated from 1 published source(s) TSC1 Q92574 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 0 published source(s) TSC2 P49815 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) U2AF1 P0DN76 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 2 published source(s) U2AF1 Q01081 0 clinical assertion(s) and 8 evidence item(s) for 3 variant(s) curated from 2 published source(s) WT1 P19544 0 clinical assertion(s) and 12 evidence item(s) for 3 variant(s) curated from 0 published source(s) -NOTCH1 P46531 0 clinical assertion(s) and 25 evidence item(s) for 29 variant(s) curated from 3 published source(s) +NOTCH1 P46531 0 clinical assertion(s) and 25 evidence item(s) for 18 variant(s) curated from 3 published source(s) DDR2 Q16832 0 clinical assertion(s) and 7 evidence item(s) for 7 variant(s) curated from 0 published source(s) -MET P08581 0 clinical assertion(s) and 62 evidence item(s) for 19 variant(s) curated from 1 published source(s) +MET P08581 0 clinical assertion(s) and 61 evidence item(s) for 19 variant(s) curated from 1 published source(s) FLI1 Q01543 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) EWSR1 Q01844 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 2 published source(s) TET2 Q6N021 0 clinical assertion(s) and 6 evidence item(s) for 1 variant(s) curated from 0 published source(s) FOXP1 Q9H334 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) REL Q04864 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -VHL P40337 6 clinical assertion(s) and 2399 evidence item(s) for 709 variant(s) curated from 4 published source(s) -BCL2 P10415 0 clinical assertion(s) and 29 evidence item(s) for 16 variant(s) curated from 0 published source(s) +VHL P40337 6 clinical assertion(s) and 2351 evidence item(s) for 683 variant(s) curated from 4 published source(s) +BCL2 P10415 0 clinical assertion(s) and 28 evidence item(s) for 16 variant(s) curated from 0 published source(s) IGF2 P01344 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) AURKA O14965 0 clinical assertion(s) and 7 evidence item(s) for 3 variant(s) curated from 0 published source(s) PBRM1 Q86U86 0 clinical assertion(s) and 8 evidence item(s) for 2 variant(s) curated from 0 published source(s) -EZH2 Q15910 0 clinical assertion(s) and 23 evidence item(s) for 10 variant(s) curated from 0 published source(s) +EZH2 Q15910 0 clinical assertion(s) and 22 evidence item(s) for 10 variant(s) curated from 0 published source(s) KMT2D O14686 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) BTK Q06187 0 clinical assertion(s) and 5 evidence item(s) for 4 variant(s) curated from 0 published source(s) APC P25054 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) AR P10275 0 clinical assertion(s) and 20 evidence item(s) for 10 variant(s) curated from 0 published source(s) ASXL1 Q8IXJ9 0 clinical assertion(s) and 8 evidence item(s) for 2 variant(s) curated from 0 published source(s) -ATM Q13315 0 clinical assertion(s) and 46 evidence item(s) for 35 variant(s) curated from 2 published source(s) +ATM Q13315 0 clinical assertion(s) and 46 evidence item(s) for 31 variant(s) curated from 2 published source(s) BAP1 Q92560 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 1 published source(s) ERG P11308 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) FOXL2 P58012 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) IKZF1 Q13422 1 clinical assertion(s) and 19 evidence item(s) for 3 variant(s) curated from 0 published source(s) NCOA3 Q9Y6Q9 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) PAX8 Q06710 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 3 published source(s) -PGR P06401 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) -SMAD4 Q13485 0 clinical assertion(s) and 19 evidence item(s) for 11 variant(s) curated from 0 published source(s) -SMARCA4 P51532 0 clinical assertion(s) and 12 evidence item(s) for 4 variant(s) curated from 0 published source(s) -TERT O14746 0 clinical assertion(s) and 16 evidence item(s) for 6 variant(s) curated from 0 published source(s) +PGR P06401 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) +SMAD4 Q13485 0 clinical assertion(s) and 19 evidence item(s) for 10 variant(s) curated from 0 published source(s) +SMARCA4 P51532 0 clinical assertion(s) and 11 evidence item(s) for 4 variant(s) curated from 0 published source(s) +TERT O14746 0 clinical assertion(s) and 16 evidence item(s) for 5 variant(s) curated from 0 published source(s) TTF1 Q15361 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) ABL2 P42684 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) ACTA1 P68133 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -85,20 +85,20 @@ ACTL6A O96019 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) cu ACVR1 Q04771 1 clinical assertion(s) and 9 evidence item(s) for 6 variant(s) curated from 0 published source(s) PARP1 P09874 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) AEBP1 Q8IUX7 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -AKT2 P31751 0 clinical assertion(s) and 2 evidence item(s) for 3 variant(s) curated from 0 published source(s) +AKT2 P31751 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) ALCAM Q13740 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) BIRC3 Q13489 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) BIRC5 O15392 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) -AREG P15514 0 clinical assertion(s) and 6 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AREG P15514 0 clinical assertion(s) and 5 evidence item(s) for 1 variant(s) curated from 0 published source(s) RHOA P61586 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) ASCL1 P50553 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) ASNS P08243 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) ASS1 P00966 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) ATR Q13535 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -ATRX P46100 0 clinical assertion(s) and 9 evidence item(s) for 4 variant(s) curated from 0 published source(s) +ATRX P46100 0 clinical assertion(s) and 7 evidence item(s) for 3 variant(s) curated from 0 published source(s) AXL P30530 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) B2M P61769 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) -BARD1 Q99728 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) +BARD1 Q99728 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) TNFRSF17 Q02223 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) CEACAM1 P13688 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) PRDM1 O75626 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -106,7 +106,7 @@ BLK P51451 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curat CALR P27797 0 clinical assertion(s) and 8 evidence item(s) for 2 variant(s) curated from 0 published source(s) CASP8 Q14790 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) CBFA2T3 O75081 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) -CBFB Q13951 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 2 published source(s) +CBFB Q13951 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 2 published source(s) CBL P22681 0 clinical assertion(s) and 8 evidence item(s) for 7 variant(s) curated from 0 published source(s) CBLB Q13191 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) CD44 P16070 1 clinical assertion(s) and 17 evidence item(s) for 9 variant(s) curated from 0 published source(s) @@ -118,7 +118,7 @@ CDK9 P50750 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) cura CDKN1A P38936 0 clinical assertion(s) and 4 evidence item(s) for 4 variant(s) curated from 0 published source(s) CDKN1B P46527 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) CDKN2B P42772 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) -CDX2 Q99626 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CDX2 Q99626 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) CHEK1 O14757 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) CREBBP Q92793 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) CRKL P46109 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -126,9 +126,9 @@ CSF1 P09603 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cura CSF3R Q99062 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) CTAG1B P78358 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) CTLA4 P16410 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) -CTNNB1 P35222 1 clinical assertion(s) and 32 evidence item(s) for 13 variant(s) curated from 0 published source(s) +CTNNB1 P35222 1 clinical assertion(s) and 27 evidence item(s) for 12 variant(s) curated from 0 published source(s) CYP2D6 P10635 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -DBI P07108 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +DBI P07108 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) DCC P43146 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) GADD45A P24522 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) DDIT3 P35638 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) @@ -138,7 +138,7 @@ DNMT1 P26358 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) cur DPYD Q12882 0 clinical assertion(s) and 4 evidence item(s) for 4 variant(s) curated from 0 published source(s) DRD5 P21918 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) DUSP6 Q16828 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -EFNA2 O43921 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +EFNA2 O43921 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) EGF P01133 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) EIF1AX P47813 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) EIF4EBP1 Q13541 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -147,7 +147,7 @@ EPAS1 Q99814 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) cur EPHB2 P29323 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) EPHB4 P54760 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) EPOR P19235 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) -ERBB3 P21860 0 clinical assertion(s) and 16 evidence item(s) for 15 variant(s) curated from 0 published source(s) +ERBB3 P21860 0 clinical assertion(s) and 15 evidence item(s) for 6 variant(s) curated from 0 published source(s) ERBB4 Q15303 0 clinical assertion(s) and 6 evidence item(s) for 4 variant(s) curated from 3 published source(s) ERCC1 P07992 0 clinical assertion(s) and 9 evidence item(s) for 3 variant(s) curated from 0 published source(s) ERCC2 P18074 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 3 published source(s) @@ -157,7 +157,7 @@ ETS2 P15036 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cura ETV1 P50549 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) ETV4 P43268 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) ETV5 P41161 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) -ETV6 P41212 0 clinical assertion(s) and 7 evidence item(s) for 6 variant(s) curated from 0 published source(s) +ETV6 P41212 0 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) MECOM Q03112 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) MECOM Q13465 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) FANCA O15360 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -170,16 +170,16 @@ FCGR3A P08637 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) cu FGF2 P09038 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) FGF3 P11487 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 2 published source(s) FGF13 Q92913 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -FGFR1 P11362 0 clinical assertion(s) and 45 evidence item(s) for 11 variant(s) curated from 8 published source(s) +FGFR1 P11362 0 clinical assertion(s) and 43 evidence item(s) for 11 variant(s) curated from 8 published source(s) FGFR4 P22455 0 clinical assertion(s) and 9 evidence item(s) for 5 variant(s) curated from 0 published source(s) FOXF1 Q12946 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) FOXC2 Q99958 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) FOXO1 Q12778 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) -FOXO3 O43524 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) +FOXO3 O43524 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) FLT4 P35916 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) FNTB P49356 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) FOS P01100 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) -MTOR P42345 0 clinical assertion(s) and 30 evidence item(s) for 21 variant(s) curated from 3 published source(s) +MTOR P42345 0 clinical assertion(s) and 28 evidence item(s) for 21 variant(s) curated from 3 published source(s) GAS6 Q14393 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) GATA1 P15976 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) B4GALT1 P15291 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -195,7 +195,7 @@ GSTP1 P09211 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) cur MSH6 P52701 0 clinical assertion(s) and 7 evidence item(s) for 7 variant(s) curated from 0 published source(s) HDAC2 Q92769 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) HGF P14210 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -NRG1 Q02297 0 clinical assertion(s) and 24 evidence item(s) for 8 variant(s) curated from 0 published source(s) +NRG1 Q02297 0 clinical assertion(s) and 22 evidence item(s) for 7 variant(s) curated from 0 published source(s) HIF1A Q16665 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) HLA-C P10321 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) HLA-DRA P01903 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -211,14 +211,14 @@ IL6 P05231 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curat IL7R P16871 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) CXCL10 P02778 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) JAK1 P23458 0 clinical assertion(s) and 7 evidence item(s) for 6 variant(s) curated from 0 published source(s) -JAK3 P52333 0 clinical assertion(s) and 3 evidence item(s) for 8 variant(s) curated from 0 published source(s) +JAK3 P52333 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) JUN P05412 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) KDR P35968 0 clinical assertion(s) and 7 evidence item(s) for 6 variant(s) curated from 0 published source(s) KRT18 P05783 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) LAG3 P18627 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) STMN1 P16949 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) LEPR P48357 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -LYN P07948 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +LYN P07948 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) TACSTD2 P09758 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) EPCAM P16422 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) MDM2 Q00987 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 0 published source(s) @@ -227,7 +227,7 @@ MEN1 O00255 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) cura MITF O75030 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) MKI67 P46013 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) MLH1 P40692 0 clinical assertion(s) and 29 evidence item(s) for 29 variant(s) curated from 0 published source(s) -KMT2A Q03164 3 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) +KMT2A Q03164 2 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) MMP2 P08253 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) MMP9 P14780 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) MN1 Q10571 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -241,23 +241,23 @@ MYC P01106 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curat MYCL P12524 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) MYCN P04198 0 clinical assertion(s) and 9 evidence item(s) for 2 variant(s) curated from 0 published source(s) MYD88 Q99836 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) -MYOD1 P15172 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) +MYOD1 P15172 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) NBN O60934 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) NEDD9 Q14511 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -NF1 P21359 0 clinical assertion(s) and 16 evidence item(s) for 4 variant(s) curated from 0 published source(s) -NF2 P35240 0 clinical assertion(s) and 6 evidence item(s) for 5 variant(s) curated from 0 published source(s) +NF1 P21359 0 clinical assertion(s) and 15 evidence item(s) for 4 variant(s) curated from 0 published source(s) +NF2 P35240 0 clinical assertion(s) and 5 evidence item(s) for 4 variant(s) curated from 0 published source(s) NFE2L2 Q16236 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) NOTCH3 Q9UM47 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) NT5E P21589 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -NTRK1 P04629 1 clinical assertion(s) and 43 evidence item(s) for 19 variant(s) curated from 0 published source(s) +NTRK1 P04629 1 clinical assertion(s) and 42 evidence item(s) for 18 variant(s) curated from 0 published source(s) NTRK2 Q16620 0 clinical assertion(s) and 9 evidence item(s) for 6 variant(s) curated from 0 published source(s) -NTRK3 Q16288 1 clinical assertion(s) and 29 evidence item(s) for 10 variant(s) curated from 0 published source(s) +NTRK3 Q16288 1 clinical assertion(s) and 28 evidence item(s) for 9 variant(s) curated from 0 published source(s) NUP98 P52948 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) PAX5 Q02548 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) PCNA P12004 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PDGFB P01127 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PDGFRB P09619 1 clinical assertion(s) and 14 evidence item(s) for 5 variant(s) curated from 0 published source(s) -ABCB1 P08183 0 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) +ABCB1 P08183 0 clinical assertion(s) and 7 evidence item(s) for 4 variant(s) curated from 0 published source(s) PIK3CB P42338 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PIM1 P11309 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PIK3R1 P27986 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -295,7 +295,7 @@ RB1 P06400 0 clinical assertion(s) and 9 evidence item(s) for 7 variant(s) curat RELA Q04206 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) RHEB Q15382 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) RIT1 Q92963 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) -ROS1 P08922 1 clinical assertion(s) and 43 evidence item(s) for 15 variant(s) curated from 4 published source(s) +ROS1 P08922 1 clinical assertion(s) and 41 evidence item(s) for 14 variant(s) curated from 4 published source(s) RPS6 P62753 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) RRM1 P23921 0 clinical assertion(s) and 10 evidence item(s) for 2 variant(s) curated from 0 published source(s) RRM2 P31350 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -305,7 +305,7 @@ SDHA P31040 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cura SDHB P21912 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) SRSF2 Q01130 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) SGK1 O00141 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) -SMARCB1 Q12824 1 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 0 published source(s) +SMARCB1 Q12824 1 clinical assertion(s) and 5 evidence item(s) for 3 variant(s) curated from 0 published source(s) SMO Q99835 0 clinical assertion(s) and 35 evidence item(s) for 18 variant(s) curated from 0 published source(s) SOX10 P56693 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) SSX1 Q16384 0 clinical assertion(s) and 7 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -315,8 +315,8 @@ STAT1 P42224 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cur STAT3 P40763 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) STAT5B P51692 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) STAT6 P42226 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -SULT1E1 P49888 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -STK11 Q15831 0 clinical assertion(s) and 21 evidence item(s) for 7 variant(s) curated from 0 published source(s) +SULT1E1 P49888 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) +STK11 Q15831 0 clinical assertion(s) and 17 evidence item(s) for 7 variant(s) curated from 0 published source(s) SYK P43405 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) ZEB1 P37275 0 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) TCF19 Q9Y242 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -327,7 +327,7 @@ TGFA P01135 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cura TGFBR3 Q03167 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) THBS2 P35442 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) TIMP1 P01033 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) -TMPRSS2 O15393 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +TMPRSS2 O15393 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) TOP1 P11387 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) TOP2A P11388 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) TP53BP1 Q12888 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -336,7 +336,7 @@ TSPYL1 Q9H0U9 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) cu TYK2 P29597 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) TYMS P04818 0 clinical assertion(s) and 8 evidence item(s) for 5 variant(s) curated from 0 published source(s) KDM6A O15550 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -VEGFA P15692 0 clinical assertion(s) and 15 evidence item(s) for 7 variant(s) curated from 0 published source(s) +VEGFA P15692 0 clinical assertion(s) and 14 evidence item(s) for 7 variant(s) curated from 0 published source(s) VEGFC P49767 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) WEE1 P30291 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) WNT11 O96014 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -363,35 +363,35 @@ ABCG2 Q9UNQ0 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cur KIF23 Q02241 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) HDAC9 Q9UKV0 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) CUL7 Q14999 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) -FGF19 O95750 0 clinical assertion(s) and 4 evidence item(s) for 3 variant(s) curated from 0 published source(s) -AKT3 Q9Y243 0 clinical assertion(s) and 5 evidence item(s) for 6 variant(s) curated from 0 published source(s) +FGF19 O95750 0 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AKT3 Q9Y243 0 clinical assertion(s) and 5 evidence item(s) for 2 variant(s) curated from 0 published source(s) BCL2L11 O43521 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) SH2B3 Q9UQQ2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) RAD50 Q92878 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) SPRY2 O43597 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -MAEA Q7L5Y9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +MAEA Q7L5Y9 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) TUBB3 Q13509 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) YAP1 P46937 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) MERTK Q12866 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) HOXB13 Q92826 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) -NCOA2 Q15596 1 clinical assertion(s) and 4 evidence item(s) for 2 variant(s) curated from 0 published source(s) +NCOA2 Q15596 1 clinical assertion(s) and 4 evidence item(s) for 1 variant(s) curated from 0 published source(s) AGR2 O95994 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) SLCO1B1 Q9Y6L6 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) CTCF P49711 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) DLL3 Q9NYJ7 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) STAG3 Q9UJ98 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -STAG2 Q8N3U4 0 clinical assertion(s) and 6 evidence item(s) for 3 variant(s) curated from 0 published source(s) +STAG2 Q8N3U4 0 clinical assertion(s) and 6 evidence item(s) for 2 variant(s) curated from 0 published source(s) HSPH1 Q92598 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) TLK2 Q86UE8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PTPRT O14522 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PTP4A3 O75365 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -CHEK2 O96017 0 clinical assertion(s) and 7 evidence item(s) for 5 variant(s) curated from 0 published source(s) +CHEK2 O96017 0 clinical assertion(s) and 6 evidence item(s) for 5 variant(s) curated from 0 published source(s) RRAS2 P62070 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) ZHX2 Q9Y6X8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) DKK1 O94907 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) NT5C2 P49902 0 clinical assertion(s) and 18 evidence item(s) for 6 variant(s) curated from 1 published source(s) CIC Q96RK0 0 clinical assertion(s) and 11 evidence item(s) for 3 variant(s) curated from 0 published source(s) -DICER1 Q9UPY3 0 clinical assertion(s) and 20 evidence item(s) for 12 variant(s) curated from 0 published source(s) +DICER1 Q9UPY3 0 clinical assertion(s) and 19 evidence item(s) for 11 variant(s) curated from 0 published source(s) SIRT1 Q96EB6 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) BRD4 O60885 0 clinical assertion(s) and 6 evidence item(s) for 2 variant(s) curated from 0 published source(s) CBLC Q9ULV8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -401,7 +401,7 @@ WWTR1 Q9GZV5 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cur SETBP1 Q9Y6X0 0 clinical assertion(s) and 3 evidence item(s) for 3 variant(s) curated from 0 published source(s) PDCD4 Q53EL6 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) MAGEH1 Q9H213 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -DROSHA Q9NRR4 0 clinical assertion(s) and 1 evidence item(s) for 2 variant(s) curated from 0 published source(s) +DROSHA Q9NRR4 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) TBK1 Q9UHD2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) CD274 Q9NZQ7 0 clinical assertion(s) and 24 evidence item(s) for 1 variant(s) curated from 1 published source(s) TLX3 O43711 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) @@ -413,7 +413,7 @@ SUFU Q9UMX1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cura CDK12 Q9NYV4 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) RSF1 Q96T23 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) LRP1B Q9NZR2 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 3 published source(s) -ERRFI1 Q9UJM3 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) +ERRFI1 Q9UJM3 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) ROBO4 Q8WZ75 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) UGT1A1 P22309 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) BCOR Q6W2J9 0 clinical assertion(s) and 3 evidence item(s) for 2 variant(s) curated from 0 published source(s) @@ -427,23 +427,23 @@ POLE4 Q9NR33 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) cur KMT2C Q8NEZ4 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) PAPPA2 Q9BXP8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PBLD P30039 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -CRLF2 Q9HC73 0 clinical assertion(s) and 18 evidence item(s) for 6 variant(s) curated from 0 published source(s) +CRLF2 Q9HC73 0 clinical assertion(s) and 17 evidence item(s) for 5 variant(s) curated from 0 published source(s) RBM15 Q96T37 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) BIRC7 Q96CA5 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 1 published source(s) PALB2 Q86YC2 0 clinical assertion(s) and 9 evidence item(s) for 5 variant(s) curated from 0 published source(s) PREX2 Q70Z35 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PDCD1LG2 Q9BQ51 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) NECTIN4 Q96NY8 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -CARD11 Q9BXL7 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +CARD11 Q9BXL7 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) HAVCR2 Q8TDQ0 0 clinical assertion(s) and 2 evidence item(s) for 1 variant(s) curated from 0 published source(s) ABCC10 Q5T3U5 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) IL33 O95760 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) SLFN11 Q7Z7L1 0 clinical assertion(s) and 3 evidence item(s) for 1 variant(s) curated from 0 published source(s) -RCSD1 Q6JBY9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +RCSD1 Q6JBY9 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) NAPRT Q6XQN6 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) VPS37A Q8NEZ2 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) PXDNL A1KZ92 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) -AMER1 Q5JTC6 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) +AMER1 Q5JTC6 0 clinical assertion(s) and 0 evidence item(s) for 0 variant(s) curated from 0 published source(s) DGKH Q86XP1 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) ARID2 Q68CP9 0 clinical assertion(s) and 1 evidence item(s) for 1 variant(s) curated from 0 published source(s) FLCN Q8NFG4 0 clinical assertion(s) and 2 evidence item(s) for 2 variant(s) curated from 0 published source(s) From 2c4e37135bd891cd5cd273c997441f2f146075fd Mon Sep 17 00:00:00 2001 From: dorian Date: Fri, 10 Sep 2021 13:35:00 -0500 Subject: [PATCH 4/4] fixed database.yml file --- config/database.yml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/config/database.yml b/config/database.yml index b5e0fc9e..95746b82 100644 --- a/config/database.yml +++ b/config/database.yml @@ -7,8 +7,6 @@ default: &default development: <<: *default database: civic_development - username: civic-dev - password: Y0o_da3&! test: <<: *default @@ -21,4 +19,4 @@ test: production: <<: *default pool: 20 - database: civic + database: civic \ No newline at end of file