diff --git a/docs/frequently_asked_questions.rst b/docs/frequently_asked_questions.rst index 55e835e..f684163 100644 --- a/docs/frequently_asked_questions.rst +++ b/docs/frequently_asked_questions.rst @@ -10,6 +10,15 @@ Frequently Asked Questions .. role:: large .. role:: large-code +:large:`What type of variants does pVAC-Seq support?` + +pVAC-Seq makes predictions for all transcripts of a variant that were annotated +as ``missense_variant``, ``inframe_insertions``, ``inframe_deletion``, or +``frameshift_variant`` by VEP as long as the transcript was not also annotated +as ``start_lost``. In addition, pVAC-Seq only includes variants that were +called as homozygous or heterozygous variant. Variants that were not called +are skipped. + :large:`My pVAC-Seq command has been running for a long time. Why is that?`