diff --git a/pvactools/tools/pvacview/anchor_and_helper_functions.R b/pvactools/tools/pvacview/anchor_and_helper_functions.R index d48e5ba2..912d9d6f 100644 --- a/pvactools/tools/pvacview/anchor_and_helper_functions.R +++ b/pvactools/tools/pvacview/anchor_and_helper_functions.R @@ -13,8 +13,8 @@ anchor_data[[11]] <- read.table(curl("https://raw.githubusercontent.com/griffith ## Load Mouse Anchor data mouse_anchor_data <- list() mouse_anchor_data[[8]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/9f6f29936a051db28b913eb9e9ee23c4b7b8176f/pvactools/tools/pvacview/data/mouse_anchor_predictions_8_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) -mouse_anchor_data[[9]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) -mouse_anchor_data[[10]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/2a44403d9844a27cfca05bb158b87b747aba3ae2/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) +mouse_anchor_data[[9]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/bf19ff76c82cec63ba351ecb8ed8dfe07ab975a1/pvactools/tools/pvacview/data/mouse_anchor_predictions_9_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) +mouse_anchor_data[[10]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/bf19ff76c82cec63ba351ecb8ed8dfe07ab975a1/pvactools/tools/pvacview/data/mouse_anchor_predictions_10_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) mouse_anchor_data[[11]] <- read.table(curl("https://raw.githubusercontent.com/griffithlab/pVACtools/9f6f29936a051db28b913eb9e9ee23c4b7b8176f/pvactools/tools/pvacview/data/mouse_anchor_predictions_11_mer.tsv"), sep = "\t", header = TRUE, stringsAsFactors = FALSE) #get binding affinity colors cutoffs given HLA