From e9ddc74600acb0ddab25fdfa1440c336df7eb4a3 Mon Sep 17 00:00:00 2001 From: mhoang22 <98837430+mhoang22@users.noreply.github.com> Date: Fri, 10 Jan 2025 12:17:25 -0600 Subject: [PATCH 1/2] add citation for pvacview --- docs/citation.rst | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/citation.rst b/docs/citation.rst index ace551564..7d3f9167e 100644 --- a/docs/citation.rst +++ b/docs/citation.rst @@ -19,3 +19,5 @@ L. Griffith, Elaine R. Mardis, and Malachi Griffith. `pVACseq: A genome-guided in silico approach to identifying tumor neoantigens `_. Genome Medicine. 2016, 8:11, DOI: 10.1186/s13073-016-0264-5. PMID: `26825632 `_. + +Huiming Xia, My H. Hoang, Evelyn Schmidt, Susanna Kiwala, Joshua McMichael, Zachary L. Skidmore, Bryan Fisk, Jonathan J. Song, Jasreet Hundal, Thomas Mooney, Jason R. Walker, S. Peter Goedegebuure, Christopher A. Miller, William E. Gillanders, Obi L. Griffith, Malachi Griffith. `pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection `_. Genome Medicine. 2024, 16:132, DOI: 10.1186/s13073-024-01384-7. PMID: `39538339 `_. \ No newline at end of file From ae054e5c2eda2e0ee29fc5fbd81d51859a1ecb65 Mon Sep 17 00:00:00 2001 From: mhoang22 <98837430+mhoang22@users.noreply.github.com> Date: Wed, 15 Jan 2025 09:18:48 -0600 Subject: [PATCH 2/2] add citation to FAQ and index (homepage) --- docs/frequently_asked_questions.rst | 1 + docs/index.rst | 2 ++ 2 files changed, 3 insertions(+) diff --git a/docs/frequently_asked_questions.rst b/docs/frequently_asked_questions.rst index 4037b1a71..5060152b1 100644 --- a/docs/frequently_asked_questions.rst +++ b/docs/frequently_asked_questions.rst @@ -40,3 +40,4 @@ in silico approach to identifying tumor neoantigens `_. +Huiming Xia, My H. Hoang, Evelyn Schmidt, Susanna Kiwala, Joshua McMichael, Zachary L. Skidmore, Bryan Fisk, Jonathan J. Song, Jasreet Hundal, Thomas Mooney, Jason R. Walker, S. Peter Goedegebuure, Christopher A. Miller, William E. Gillanders, Obi L. Griffith, Malachi Griffith. `pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection `_. Genome Medicine. 2024, 16:132, DOI: 10.1186/s13073-024-01384-7. PMID: `39538339 `_. diff --git a/docs/index.rst b/docs/index.rst index 4179f7b39..a8c7b80d4 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -131,6 +131,8 @@ in silico approach to identifying tumor neoantigens `_. +Huiming Xia, My H. Hoang, Evelyn Schmidt, Susanna Kiwala, Joshua McMichael, Zachary L. Skidmore, Bryan Fisk, Jonathan J. Song, Jasreet Hundal, Thomas Mooney, Jason R. Walker, S. Peter Goedegebuure, Christopher A. Miller, William E. Gillanders, Obi L. Griffith, Malachi Griffith. `pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection `_. Genome Medicine. 2024, 16:132, DOI: 10.1186/s13073-024-01384-7. PMID: `39538339 `_. + Source code ----------- The pVACtools source code is available in `GitHub `_.