cookiecutter.json

{
    "project_name": "Your new project name",
    "project_id": "{{ cookiecutter.project_name.lower().replace(' ', '_').replace('-', '_') }}",
    "short_description": "Brief overview of data.",
    "date_creation": "{% now 'utc', '%Y%m%d' %}",
    "technology": "such as ['PacBio_HiFi','OxfordNanopore','10xGenomics', 'exome', 'WGS']",
    "processed_by": "Person responsible for pre-processing (pipeline execution)",
    "is_paired": ["single-end", "paired-end","N/A"],
    "n_samples": "How many samples have been sequenced?",
    "pipeline": "Pipeline name [Example: nf-core/rnaseq or custom]",
    "organism": "What organism is this?",
    "organism_reference": "version of genome used [grch38, grhc37, hg19]",
    "origin": "internal or external (if external, indicate publication or collaborator)",
    "notes": "extra information on the data",
    "version": "XX",
    "path_dataset": "./",
    "contact_person": "Name contact person",
    "contact_email": "abc123@ku.dk"
}