From f823a8f9b4f00f4f48a012f30900aa2eff141509 Mon Sep 17 00:00:00 2001 From: Hiruna Samarakoon Date: Mon, 6 May 2024 22:35:01 +1000 Subject: [PATCH] Update snake.yml --- .github/workflows/snake.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/snake.yml b/.github/workflows/snake.yml index 2f290b6..641d659 100644 --- a/.github/workflows/snake.yml +++ b/.github/workflows/snake.yml @@ -108,7 +108,7 @@ jobs: - name: install packages run: pip3 install numpy --break-system-packages - name: install - run: export HTSLIB_CONFIGURE_OPTIONS="--enable-bz2=no --enable-lzma=no --with-libdeflate=no --enable-libcurl=no --enable-gcs=no --enable-s3=no" && pip3 install . && squigualiser --help + run: export HTSLIB_CONFIGURE_OPTIONS="--enable-bz2=no --enable-lzma=no --with-libdeflate=no --enable-libcurl=no --enable-gcs=no --enable-s3=no" && pip3 install . --break-system-packages && squigualiser --help - name: test_reform run: test/test_reform.sh - name: test_realign