config.txt

##
## This file contains all source files used by burden_get_regions_v2.1pl script
##
## Last modified: 2017.08.03 - updated region file.
##
## Format:
#### 1. Start comment lines with #
#### 2. keys and values are = sign separated.
##
##
## The order of the entries does not matter.
## The list can be further extended, also the Perl script has to be adjusted to.
## acceppt and use the newly added items.
##

## This file contains coordinates of the gene related genomic features and annotation:
Linked_features=/usr/local/bin/burden_testing/test2/2019.11.15/Linked_features.bed.gz

gencode_file=/usr/local/bin/burden_testing/gencode.v32.basic.annotation.tsv.gz

tempdir=/usr/local/bin/burden_testing/temp

EigenPath=/usr/local/bin/burden_testing/scores/Eigen_hg19_noncoding_annot_chr%.tab.bgz

## Path to CADD scores:
caddPath=/usr/local/bin/burden_testing/scores/whole_genome_SNVs_inclAnno.tsv.gz

## Path to linsight file:
Linsight=/usr/local/bin/burden_testing/scores/LINSIGHT.bw