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Matt Holt edited this page Apr 7, 2016 · 11 revisions

Welcome to the msbwt wiki!

Getting Started

  1. Installation of msbwt - an overview of the basic steps for installing the msbwt command line interface and Python API
  2. Constructing the MSBWT - an overview of the command line instructions for building a MSBWT
  3. Queries with the Python API - an overview of the basic Python commands for MSBWT queries

Other topics

  1. Converting to msbwt's RLE format - an overview of converting externally generated MSBWTs to our RLE format

References

Holt, J., & McMillan, L. (2014). Merging of multi-string BWTs with applications. Bioinformatics, btu584.

Holt, J., & McMillan, L. (2014, September). Constructing burrows-wheeler transforms of large string collections via merging. In Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (pp. 464-471). ACM.

Contact Us

James Holt - [email protected]

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