diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index 9b1a3267f..6c81ba445 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -40,7 +40,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -225,7 +226,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1493,4 +1495,4 @@ }, "timestamp": "2024-12-03T12:39:04.406597796" } -} \ No newline at end of file +} diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap index cb5148262..8dc553d3c 100644 --- a/tests/featurecounts_group_type.nf.test.snap +++ b/tests/featurecounts_group_type.nf.test.snap @@ -40,7 +40,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -219,7 +220,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1443,4 +1445,4 @@ }, "timestamp": "2024-12-03T17:25:47.179044158" } -} \ No newline at end of file +} diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap index 36b62e586..6c636a54a 100644 --- a/tests/hisat2.nf.test.snap +++ b/tests/hisat2.nf.test.snap @@ -38,7 +38,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_HISAT2_INDEX": { "untar": 1.34 @@ -219,7 +220,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1343,4 +1345,4 @@ }, "timestamp": "2024-12-03T17:38:50.917761241" } -} \ No newline at end of file +} diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap index 273c590cb..3be9c4e1c 100644 --- a/tests/kallisto.nf.test.snap +++ b/tests/kallisto.nf.test.snap @@ -50,7 +50,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -313,7 +314,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -363,4 +365,4 @@ }, "timestamp": "2024-12-03T17:49:02.306667165" } -} \ No newline at end of file +} diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap index 187c5b3cf..198ebc1ae 100644 --- a/tests/min_mapped_reads.nf.test.snap +++ b/tests/min_mapped_reads.nf.test.snap @@ -122,7 +122,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1240,7 +1241,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -1302,4 +1304,4 @@ }, "timestamp": "2024-12-03T17:57:59.273391037" } -} \ No newline at end of file +} diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap index 607d8beb6..0cb05e4df 100644 --- a/tests/remove_ribo_rna.nf.test.snap +++ b/tests/remove_ribo_rna.nf.test.snap @@ -128,7 +128,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1454,7 +1455,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -1516,4 +1518,4 @@ }, "timestamp": "2024-12-03T18:13:56.979730403" } -} \ No newline at end of file +} diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap index 28eeb3c90..f95d31988 100644 --- a/tests/salmon.nf.test.snap +++ b/tests/salmon.nf.test.snap @@ -44,7 +44,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -386,7 +387,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -436,4 +438,4 @@ }, "timestamp": "2024-12-03T19:46:22.63337267" } -} \ No newline at end of file +} diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap index 7e2bebed1..ff35f4743 100644 --- a/tests/skip_qc.nf.test.snap +++ b/tests/skip_qc.nf.test.snap @@ -37,7 +37,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_SALMON_INDEX": { "untar": 1.34 @@ -167,7 +168,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -821,4 +823,4 @@ }, "timestamp": "2024-12-03T18:20:07.800214285" } -} \ No newline at end of file +} diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap index 14cd39ce2..31bf3c782 100644 --- a/tests/star_rsem.nf.test.snap +++ b/tests/star_rsem.nf.test.snap @@ -119,7 +119,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1330,7 +1331,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UNTAR_RSEM_INDEX": { "untar": 1.34 @@ -1395,4 +1397,4 @@ }, "timestamp": "2024-12-03T18:38:21.04782292" } -} \ No newline at end of file +} diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap index b5c8a7579..b8376d44f 100644 --- a/tests/umi.nf.test.snap +++ b/tests/umi.nf.test.snap @@ -116,7 +116,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -1620,7 +1621,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "TXIMETA_TXIMPORT": { "bioconductor-tximeta": "1.20.1" @@ -2788,7 +2790,8 @@ }, "TRIMGALORE": { "trimgalore": "0.6.10", - "cutadapt": 4.9 + "cutadapt": 4.9, + "pigz": 2.8 }, "UMITOOLS_EXTRACT": { "umitools": "1.1.5" @@ -2859,4 +2862,4 @@ }, "timestamp": "2024-12-19T23:28:01.570835895" } -} \ No newline at end of file +}