pyproject.toml

[build-system]
requires = ["setuptools>=65.6.3"]
build-backend = "setuptools.build_meta"

[project]
name = "hpo-toolkit"
description = "A toolkit for working with Human Phenotype Ontology in Python"
authors = [
    { name = "Daniel Danis", email = "daniel.gordon.danis@protonmail.com" }
]

readme = "README.md"
requires-python = ">=3.8"
keywords = ["human phenotype ontology", "HPO", "library"]
license = { file = "LICENSE" }
classifiers = [
    "Development Status :: 3 - Alpha",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
]
dynamic = ["version"]

dependencies = [
    "numpy >= 1.23",
    "certifi", # The latest version is the best.
]

[project.optional-dependencies]
test = [
    "pytest>=8.0.0, <9.0.0",
    "ddt >= 1.6.0",  # TODO: remove after finishing the migration to `pytest`!
]
docs = [
    "sphinx>=7.0.0", "sphinx-copybutton>=0.5.0", "sphinx-rtd-theme>=1.3.0",
]
bench = [
    'pandas >= 1.0.0, <3.0',
]

[project.urls]
homepage = "https://github.com/ielis/hpo-toolkit"
repository = "https://github.com/ielis/hpo-toolkit.git"
documentation = "https://ielis.github.io/hpo-toolkit/stable"
bugtracker = "https://github.com/ielis/hpo-toolkit/issues"

[tool.setuptools]
package-dir = { "" = "src" }
zip-safe = false

[tool.setuptools.dynamic]
version = { attr = "hpotk.__version__" }