From f9306f3f4d484db1c2d71317af47b9606013d631 Mon Sep 17 00:00:00 2001 From: Katherine Barnhart Date: Fri, 30 Oct 2020 10:17:39 -0600 Subject: [PATCH 1/2] copyedits and bib formatting --- joss/paper.bib | 82 +++++++++++++++++++++++++------------------------- joss/paper.md | 14 ++++----- 2 files changed, 48 insertions(+), 48 deletions(-) diff --git a/joss/paper.bib b/joss/paper.bib index 9a83ac3..0c3f77c 100644 --- a/joss/paper.bib +++ b/joss/paper.bib @@ -1,6 +1,6 @@ @software{netcdf, author = {Unidata}, - title = {Network Common Data Form (net{CDF}) version 4.7.4 [software]}, + title = {Network Common Data Form (net{CDF}) version 4.7.4}, month = April, year = 2020, publisher = {NCAR/Unidata Program Center}, @@ -17,7 +17,7 @@ @software{CDAT Lina Muryanto and Aashish Chaudhary and Dean N. Williams}, - title = {CDAT/cdat: CDAT 8.1}, + title = {{CDAT/cdat: CDAT 8.1}}, month = mar, year = 2019, publisher = {Zenodo}, @@ -132,7 +132,7 @@ @article{Zhu1998 isbn = {0027-0644}, year = {1998}, journal = {Monthly Weather Review}, -title = {A Proposed Algorithm for Moisture Fluxes from Atmospheric Rivers}, +title = {{A Proposed Algorithm for Moisture Fluxes from Atmospheric Rivers}}, pages = {725--735}, issue = {3}, volume = {126}, @@ -142,7 +142,7 @@ @article{Zhu1998 @article{Ralph2004, author = {Ralph, F. Martin and Neiman, Paul J. and Wick, Gary A.}, -title = {Satellite and CALJET Aircraft Observations of Atmospheric Rivers over the Eastern North Pacific Ocean during the Winter of 1997/98}, +title = {{Satellite and CALJET Aircraft Observations of Atmospheric Rivers over the Eastern North Pacific Ocean during the Winter of 1997/98}}, journal = {Monthly Weather Review}, volume = {132}, number = {7}, @@ -161,7 +161,7 @@ @article{Gimeno2014 year = {2014}, keywords = {atmospheric branch of the, atmospheric rivers, atmospheric rivers, transport of moisture, atmosph, extratropical cyclones, hydrological cycle, intense, precipitation, transport of moisture}, journal = {Frontiers in Earth Science}, -title = {Atmospheric rivers: a mini-review}, +title = {{Atmospheric rivers: A mini-review}}, pages = {1--6}, issue = {March}, volume = {2}, @@ -173,7 +173,7 @@ @article{Trenberth2003 author = {Trenberth, Kevin E. and Dai, Aiguo and Rasmussen, Roy M. and Parsons, David B.}, year = {2003}, journal = {Bulletin of the American Meteorological Society}, -title = {The Changing Character of Precipitation}, +title = {{The Changing Character of Precipitation}}, pages = {1205--1217}, issue = {9}, volume = {84}, @@ -201,7 +201,7 @@ @article{Murakami2015 year = {2015}, keywords = {Atm/Ocean Structure/Phenomena, Climate models, Climate prediction, Forecasting, Hindcasts, Models and modeling, Tropical cyclones}, journal = {Journal of Climate}, -title = {Simulation and prediction of category 4 and 5 hurricanes in the high-resolution GFDL HiFLOR coupled climate model}, +title = {{Simulation and prediction of category 4 and 5 hurricanes in the high-resolution GFDL HiFLOR coupled climate model}}, pages = {9058--9079}, issue = {23}, volume = {28}, @@ -238,7 +238,7 @@ @article{Ramer1972 @article{Canny1986, author={J. Canny}, journal={IEEE Transactions on Pattern Analysis and Machine Intelligence}, -title={A Computational Approach to Edge Detection}, +title={{A Computational Approach to Edge Detection}}, year={1986}, volume={PAMI-8}, number={6}, @@ -251,7 +251,7 @@ @article{Canny1986 @article{Ralph2011, author = {Ralph, F. M. and Neiman, P. J. and Kiladis, G. N. and Weickmann, K. and Reynolds, D. W.}, -title = {A Multiscale Observational Case Study of a Pacific Atmospheric River Exhibiting Tropical–Extratropical Connections and a Mesoscale Frontal Wave}, +title = {{A Multiscale Observational Case Study of a Pacific Atmospheric River Exhibiting Tropical–Extratropical Connections and a Mesoscale Frontal Wave}}, journal = {Monthly Weather Review}, volume = {139}, number = {4}, @@ -263,7 +263,7 @@ @article{Ralph2011 @article{Guan2015, author = {Guan, Bin and Waliser, Duane E.}, -title = {Detection of atmospheric rivers: Evaluation and application of an algorithm for global studies}, +title = {{Detection of atmospheric rivers: Evaluation and application of an algorithm for global studies}}, journal = {Journal of Geophysical Research: Atmospheres}, volume = {120}, number = {24}, @@ -277,8 +277,8 @@ @article{Guan2015 @article{Dettinger2011, author = {Dettinger, Michael}, -title = {Climate Change, Atmospheric Rivers, and Floods in California – A Multimodel Analysis of Storm Frequency and Magnitude Changes1}, -journal = {JAWRA Journal of the American Water Resources Association}, +title = {{Climate Change, Atmospheric Rivers, and Floods in California – A Multimodel Analysis of Storm Frequency and Magnitude Changes}}, +journal = {Journal of the American Water Resources Association}, volume = {47}, number = {3}, pages = {514-523}, @@ -291,7 +291,7 @@ @article{Dettinger2011 @article{Dettinger2013, author = {Dettinger, Michael D.}, -title = {Atmospheric Rivers as Drought Busters on the U.S. West Coast}, +title = {{Atmospheric Rivers as Drought Busters on the U.S. West Coast}}, journal = {Journal of Hydrometeorology}, volume = {14}, number = {6}, @@ -304,7 +304,7 @@ @article{Dettinger2013 @article{Rutz2012, author = {Rutz, Jonathan J. and Steenburgh, W. James}, -title = {Quantifying the role of atmospheric rivers in the interior western United States}, +title = {{Quantifying the role of atmospheric rivers in the interior western United States}}, journal = {Atmospheric Science Letters}, volume = {13}, number = {4}, @@ -318,7 +318,7 @@ @article{Rutz2012 @article{Lavers2012, author = {Lavers, David A. and Villarini, Gabriele and Allan, Richard P. and Wood, Eric F. and Wade, Andrew J.}, -title = {The detection of atmospheric rivers in atmospheric reanalyses and their links to British winter floods and the large-scale climatic circulation}, +title = {{The detection of atmospheric rivers in atmospheric reanalyses and their links to British winter floods and the large-scale climatic circulation}}, journal = {Journal of Geophysical Research: Atmospheres}, volume = {117}, number = {D20}, @@ -332,7 +332,7 @@ @article{Lavers2012 @article{Lavers2013, author = {Lavers, David A. and Villarini, Gabriele}, -title = {Atmospheric Rivers and Flooding over the Central United States}, +title = {{Atmospheric Rivers and Flooding over the Central United States}}, journal = {Journal of Climate}, volume = {26}, number = {20}, @@ -347,7 +347,7 @@ @article{Lavers2013 @article{Neiman2008, author = {Neiman, Paul J. and Ralph, F. Martin and Wick, Gary A. and Lundquist, Jessica D. and Dettinger, Michael D.}, -title = {Meteorological Characteristics and Overland Precipitation Impacts of Atmospheric Rivers Affecting the West Coast of North America Based on Eight Years of SSM/I Satellite Observations}, +title = {{Meteorological Characteristics and Overland Precipitation Impacts of Atmospheric Rivers Affecting the West Coast of North America Based on Eight Years of SSM/I Satellite Observations}}, journal = {Journal of Hydrometeorology}, volume = {9}, number = {1}, @@ -364,7 +364,7 @@ @article{Neiman2008 @article{Moore2012, author = {Moore, Benjamin J. and Neiman, Paul J. and Ralph, F. Martin and Barthold, Faye E.}, -title = {Physical Processes Associated with Heavy Flooding Rainfall in Nashville, Tennessee, and Vicinity during 1–2 May 2010: The Role of an Atmospheric River and Mesoscale Convective Systems}, +title = {{Physical Processes Associated with Heavy Flooding Rainfall in Nashville, Tennessee, and Vicinity during 1–2 May 2010: The Role of an Atmospheric River and Mesoscale Convective Systems}}, journal = {Monthly Weather Review}, volume = {140}, number = {2}, @@ -381,7 +381,7 @@ @article{Moore2012 @article{Mundhenk2016, author = {Mundhenk, Bryan D. and Barnes, Elizabeth A. and Maloney, Eric D.}, -title = {All-Season Climatology and Variability of Atmospheric River Frequencies over the North Pacific}, +title = {{All-Season Climatology and Variability of Atmospheric River Frequencies over the North Pacific}}, journal = {Journal of Climate}, volume = {29}, number = {13}, @@ -398,7 +398,7 @@ @article{Mundhenk2016 @article{Nayak2014, author = {Nayak, Munir A. and Villarini, Gabriele and Lavers, David A.}, -title = {On the skill of numerical weather prediction models to forecast atmospheric rivers over the central United States}, +title = {{On the skill of numerical weather prediction models to forecast atmospheric rivers over the central United States}}, journal = {Geophysical Research Letters}, volume = {41}, number = {12}, @@ -412,7 +412,7 @@ @article{Nayak2014 @article{Gorodetskaya2014, author = {Gorodetskaya, Irina V. and Tsukernik, Maria and Claes, Kim and Ralph, Martin F. and Neff, William D. and Van Lipzig, Nicole P. M.}, -title = {The role of atmospheric rivers in anomalous snow accumulation in East Antarctica}, +title = {{The role of atmospheric rivers in anomalous snow accumulation in East Antarctica}}, journal = {Geophysical Research Letters}, volume = {41}, number = {17}, @@ -427,7 +427,7 @@ @article{Gorodetskaya2014 @article{Wick2013, author={G. A. Wick and P. J. Neiman and F. M. Ralph}, journal={IEEE Transactions on Geoscience and Remote Sensing}, -title={Description and Validation of an Automated Objective Technique for Identification and Characterization of the Integrated Water Vapor Signature of Atmospheric Rivers}, +title={{Description and Validation of an Automated Objective Technique for Identification and Characterization of the Integrated Water Vapor Signature of Atmospheric Rivers}}, year={2013}, volume={51}, number={4}, @@ -443,7 +443,7 @@ @article{Dee2011 year = {2011}, keywords = {4D-Var, ERA-40, Forecast model, Hydrological cycle, Observations, Stratospheric circulation}, journal = {Quarterly Journal of the Royal Meteorological Society}, -title = {The ERA-Interim reanalysis: configuration and performance of the data assimilation system}, +title = {{The ERA-Interim reanalysis: Configuration and performance of the data assimilation system}}, pages = {553--597}, issue = {656}, volume = {137}, @@ -454,7 +454,7 @@ @article{Dee2011 @article{Kew2010, author = {Kew, Sarah F. and Sprenger, Michael and Davies, Huw C.}, -title = {Potential Vorticity Anomalies of the Lowermost Stratosphere: A 10-Yr Winter Climatology}, +title = {{Potential Vorticity Anomalies of the Lowermost Stratosphere: A 10-Yr Winter Climatology}}, journal = {Monthly Weather Review}, volume = {138}, number = {4}, @@ -466,7 +466,7 @@ @article{Kew2010 @article{Vincent1993, author={L. Vincent}, journal={IEEE Transactions on Image Processing}, -title={Morphological grayscale reconstruction in image analysis: applications and efficient algorithms}, +title={{Morphological grayscale reconstruction in image analysis: Applications and efficient algorithms}}, year={1993}, volume={2}, number={2}, @@ -481,7 +481,7 @@ @article{Rutz2014 doi = {10.1175/MWR-D-13-00168.1}, pages = {905--921}, journal = {Monthly Weather Review}, - title = {Climatological Characteristics of Atmospheric Rivers and Their Inland Penetration over the Western United States}, + title = {{Climatological Characteristics of Atmospheric Rivers and Their Inland Penetration over the Western United States}}, url = {https://doi.org/10.1175/MWR-D-13-00168.1}, volume = {142}, year = {2014} @@ -494,7 +494,7 @@ @article{Rutz2015 issue = {5}, pages = {1924-1944}, journal = {Monthly Weather Review}, - title = {The Inland Penetration of Atmospheric Rivers over Western North America: A Lagrangian Analysis}, + title = {{The Inland Penetration of Atmospheric Rivers over Western North America: A Lagrangian Analysis}}, url = {http://journals.ametsoc.org/doi/10.1175/MWR-D-14-00288.1}, volume = {143}, year = {2015} @@ -509,7 +509,7 @@ @article{Mahoney2016 pages = {1617-1632}, journal = {Mon. Wea. Rev.}, publisher = {American Meteorological Society}, - title = {Understanding the Role of Atmospheric Rivers in Heavy Precipitation in the Southeast United States}, + title = {{Understanding the Role of Atmospheric Rivers in Heavy Precipitation in the Southeast United States}}, volume = {144}, year = {2016} } @@ -522,14 +522,14 @@ @article{Sellars2017 pages = {12,465-12,475}, journal = {Geophysical Research Letters}, publisher = {American Geophysical Union (AGU)}, - title = {Genesis, Pathways, and Terminations of Intense Global Water Vapor Transport in Association with Large-Scale Climate Patterns}, + title = {{Genesis, Pathways, and Terminations of Intense Global Water Vapor Transport in Association with Large-Scale Climate Patterns}}, volume = {44}, year = {2017} } @misc{era5, author = {{Copernicus Climate Change Service (C3S)}}, - title = {{ERA5}: Fifth generation of ECMWF atmospheric reanalyses of the global climate}, + title = {{ERA5: Fifth generation of ECMWF atmospheric reanalyses of the global climate}}, publisher = {Copernicus Climate Change Service Climate Data Store (CDS)}, address = {Boulder CO}, year = {2017}, @@ -537,7 +537,7 @@ @misc{era5 } @book{dougherty1992, - title={Mathematical Morphology in Image Processing}, + title={{Mathematical Morphology in Image Processing}}, author={Dougherty, E.}, isbn={9780824787240}, lccn={92025560}, @@ -549,7 +549,7 @@ @book{dougherty1992 @article{Wernli1997, author = {Wernli, Heini}, -title = {A lagrangian-based analysis of extratropical cyclones. II: A detailed case-study}, +title = {{A lagrangian-based analysis of extratropical cyclones. II: A detailed case-study}}, journal = {Quarterly Journal of the Royal Meteorological Society}, volume = {123}, number = {542}, @@ -565,7 +565,7 @@ @article{Hagos2015 doi = {10.1175/JCLI-D-14-00567.1}, pages = {2764--2776}, journal = {Journal of Climate}, - title = {Resolution and Dynamical Core Dependence of Atmospheric River Frequency in Global Model Simulations}, + title = {{Resolution and Dynamical Core Dependence of Atmospheric River Frequency in Global Model Simulations}}, url = {https://doi.org/10.1175/JCLI-D-14-00567.1}, volume = {28}, year = {2015} @@ -574,7 +574,7 @@ @article{Hagos2015 @ARTICLE{otsu1979, author={N. {Otsu}}, journal={{IEEE} Transactions on Systems, Man, and Cybernetics}, -title={A Threshold Selection Method from Gray-Level Histograms}, +title={{A Threshold Selection Method from Gray-Level Histograms}}, year={1979}, volume={9}, number={1}, @@ -584,7 +584,7 @@ @ARTICLE{otsu1979 } @book{dreyfus2005, - title={Neural Networks: Methodology and Applications}, + title={{Neural Networks: Methodology and Applications}}, author={Dreyfus, G.}, isbn={9783540288473}, url={https://books.google.co.uk/books?id=-feS13CoyS4C}, @@ -611,7 +611,7 @@ @article{skimage @article{Guan2019, author = {Guan, Bin and Waliser, Duane E.}, -title = {Tracking Atmospheric Rivers Globally: Spatial Distributions and Temporal Evolution of Life Cycle Characteristics}, +title = {{Tracking Atmospheric Rivers Globally: Spatial Distributions and Temporal Evolution of Life Cycle Characteristics}}, journal = {Journal of Geophysical Research: Atmospheres}, volume = {124}, number = {23}, @@ -625,7 +625,7 @@ @article{Guan2019 @article{Zhou2018, author = {Zhou, Yang and Kim, Hyemi and Guan, Bin}, -title = {Life Cycle of Atmospheric Rivers: Identification and Climatological Characteristics}, +title = {{Life Cycle of Atmospheric Rivers: Identification and Climatological Characteristics}}, journal = {Journal of Geophysical Research: Atmospheres}, volume = {123}, number = {22}, @@ -639,7 +639,7 @@ @article{Zhou2018 @article{Zhou2019, author = {Zhou, Yang and Kim, Hyemi}, -title = {Impact of Distinct Origin Locations on the Life Cycles of Landfalling Atmospheric Rivers Over the U.S. West Coast}, +title = {{Impact of Distinct Origin Locations on the Life Cycles of Landfalling Atmospheric Rivers Over the U.S. West Coast}}, journal = {Journal of Geophysical Research: Atmospheres}, volume = {124}, number = {22}, @@ -656,7 +656,7 @@ @article{Rutz2019b doi = {10.1029/2019JD030936}, pages = {13777--13802}, journal = {Journal of Geophysical Research: Atmospheres}, - title = {The Atmospheric River Tracking Method Intercomparison Project (ARTMIP): Quantifying Uncertainties in Atmospheric River Climatology}, + title = {{The Atmospheric River Tracking Method Intercomparison Project (ARTMIP): Quantifying Uncertainties in Atmospheric River Climatology}}, volume = {124}, year = {2019} } @@ -669,13 +669,13 @@ @article{Shields2018 pages = {2455-2474}, journal = {Geoscientific Model Development}, publisher = {Copernicus GmbH}, - title = {Atmospheric River Tracking Method Intercomparison Project (ARTMIP): project goals and experimental design}, + title = {{Atmospheric River Tracking Method Intercomparison Project (ARTMIP): project goals and experimental design}}, volume = {11}, year = {2018} } @article{Xu2020, -AUTHOR = {Xu, Guangzhi and Ma, Xiaohui and Chang, Ping and Wang, Lin}, +AUTHOR = {Xu, G. and Ma, X. and Chang, P. and Wang, L.}, TITLE = {A Comparison of Northern Hemisphere Atmospheric Rivers Detected by a New Image-Processing Based Method and Magnitude-Thresholding Based Methods}, JOURNAL = {Atmosphere}, VOLUME = {11}, diff --git a/joss/paper.md b/joss/paper.md index 70024b1..a27fd88 100644 --- a/joss/paper.md +++ b/joss/paper.md @@ -34,11 +34,11 @@ term was coined as an analogy to terrestrial rivers in a sense that when viewed from satellite imagery or large scale atmospheric observation, they appear as narrow and elongated vapor filaments, representing transient intensified horizontal moisture fluxes -(e.g. @Gimeno2014, @Dettinger2011). A typical atmospheric river +[e.g. @Gimeno2014; @Dettinger2011]. A typical atmospheric river can carry 7-15 times the water in the Mississippi River [@Ralph2011], and at any time in winter, there are four to five such systems in the Northern Hemisphere alone [@Zhu1998], accounting for -$80-90 \,\%$ of the total north-south integrated vapor transport +80-90% of the total north-south integrated vapor transport [@Guan2015; @Zhu1998]. Its dual hydrological role, both as a fresh water source for some water-stressed areas [@Dettinger2011; @Dettinger2013; @Rutz2012] and as a potential trigger for floods @@ -55,7 +55,7 @@ identification. In many existing applications, a magnitude thresholding approach is used. For instance, @Ralph2004, @Neiman2008, @Hagos2015 and @Dettinger2011 identified ARs by first locating regions where the Integrated Water Vapor (IWV) is greater -than $20\, mm$. A $250 \, kg/(m \cdot s)$ threshold on the Integrated Vapor Transport +than 20 mm. A 250 kg/(m $\cdot$ s) threshold on the Integrated Vapor Transport (IVT) was used by @Rutz2014 and @Rutz2015. However, an implicit assumption with this magnitude thresholding approach is that the atmospheric moisture level stays unchanged throughout the analysis period. Such an assumption may @@ -73,7 +73,7 @@ more reliably traced through their tropical/sub-tropical origins to high-latitude landfalls. As the research on ARs matures, new AR detection/tracking methods are being developed, and the inter-comparisons of various AR detection/tracking methods are carried out by, for instance, -the Atmospheric River Tracking Method Intercomparison Project (ARTMIP) [@Rutz2019b;@Shields2018]. +the Atmospheric River Tracking Method Intercomparison Project [ARTMIP, @Rutz2019b;@Shields2018]. Using the terminology of ARTMIP [@Shields2018], the proposed method is a "tracking" (Lagrangian approach) type, with length and shape geometrical requirements. It imposes no threshold on IVT/IWV, but instead imposes absolute @@ -83,8 +83,8 @@ performed some systematic comparisons with two magnitude thresholding based AR detection methods included in ARTMIP, and the proposed method displays better correspondence between North Hemisphere AR tracks and storm tracks, better identification of the strong mid-latitude AR-related moisture transports, and -longer AR track durations. The detailed comparison analysis is given in [@Xu2020], and -a more thorough description of the detection/tracking methods is given in [@Xu2020b]. +longer AR track durations. The detailed comparison analysis is given in @Xu2020, and +a more thorough description of the detection/tracking methods is given in @Xu2020b. `IPART` is therefore intended for researchers and students who are interested in the field of atmospheric river studies in the present day climate or future @@ -121,7 +121,7 @@ searched. \autoref{fig:thr} shows this decomposition process. It could be seen that after this separation of background/transient components, it becomes trivial to locate AR-like features. -![(a) The IVT field in $kg/(m \cdot s)$ at 1984-01-26 00:00 UTC over the North Hemisphere. (b) the IVT reconstruction field ($\delta(I)$) at the same time point. (c) the IVT anomaly field ($I-\delta(I)$) from the THR process at the same time point.\label{fig:thr}](fig3.png) +![(a) The IVT field in kg/(m $\cdot$ s) at 1984-01-26 00:00 UTC over the North Hemisphere. (b) the IVT reconstruction field ($\delta(I)$) at the same time point. (c) the IVT anomaly field ($I-\delta(I)$) from the THR process at the same time point.\label{fig:thr}](fig3.png) After locating ARs at various time steps, a single curve is sought for each AR as a summary of its location. A directed planar graph model From 0d871a6301ed7b8a1c754ec9fe382c202fba5a01 Mon Sep 17 00:00:00 2001 From: Katherine Barnhart Date: Fri, 30 Oct 2020 10:23:36 -0600 Subject: [PATCH 2/2] add comma --- joss/paper.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/joss/paper.md b/joss/paper.md index a27fd88..9de4d91 100644 --- a/joss/paper.md +++ b/joss/paper.md @@ -34,7 +34,7 @@ term was coined as an analogy to terrestrial rivers in a sense that when viewed from satellite imagery or large scale atmospheric observation, they appear as narrow and elongated vapor filaments, representing transient intensified horizontal moisture fluxes -[e.g. @Gimeno2014; @Dettinger2011]. A typical atmospheric river +[e.g., @Gimeno2014; @Dettinger2011]. A typical atmospheric river can carry 7-15 times the water in the Mississippi River [@Ralph2011], and at any time in winter, there are four to five such systems in the Northern Hemisphere alone [@Zhu1998], accounting for