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BedAnnotateGC tool help

BedAnnotateGC (2024_08-113-g94a3b440)

Annotates GC content fraction to regions in a BED file.

Optional parameters:
  -in <file>        Input BED file. If unset, reads from STDIN.
                    Default value: ''
  -out <file>       Output BED file. If unset, writes to STDOUT.
                    Default value: ''
  -ref <file>       Reference genome FASTA file. If unset, 'reference_genome' from the 'settings.ini' file is used.
                    Default value: ''
  -extend <int>     Bases to extend around the input region for calculating the GC content.
                    Default value: '0'
  -clear            Clear all annotations present in the input file.
                    Default value: 'false'

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

BedAnnotateGC changelog

BedAnnotateGC 2024_08-113-g94a3b440

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