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BedGeneOverlap tool help

BedGeneOverlap (2024_08-113-g94a3b440)

Calculates how much of each overlapping gene is covered.

Mandatory parameters:
  -source <enum>    Transcript source database.
                    Valid: 'ccds,ensembl'

Optional parameters:
  -in <file>        Input BED file. If unset, reads from STDIN.
                    Default value: ''
  -out <file>       Output TSV file. If unset, writes to STDOUT.
                    Default value: ''
  -test             Uses the test database instead of on the production database.
                    Default value: 'false'

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

BedGeneOverlap changelog

BedGeneOverlap 2024_08-113-g94a3b440

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