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BedSort tool help

BedSort (2024_08-113-g94a3b440)

Sort the regions in a BED file.

Optional parameters:
  -in <file>        Input BED file. If unset, reads from STDIN.
                    Default value: ''
  -out <file>       Output BED file. If unset, writes to STDOUT.
                    Default value: ''
  -with_name        Uses name column (i.e. the 4th column) to sort if chr/start/end are equal.
                    Default value: 'false'
  -uniq             If set, entries with the same chr/start/end are removed after sorting.
                    Default value: 'false'

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

BedSort changelog

BedSort 2024_08-113-g94a3b440

2020-05-18 Added 'with_name' flag.

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