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VcfAnnotateHexplorer tool help

VcfAnnotateHexplorer (2024_08-113-g94a3b440)

Annotates a VCF with Hexplorer and HBond scores.

Mandatory parameters:
  -out <file>       Output VCF file containing HEXplorer and HBOND scores in the INFO column.

Optional parameters:
  -in <file>        Input VCF file. If unset, reads from STDIN.
                    Default value: ''
  -ref <file>       Reference genome FASTA file. If unset 'reference_genome' from the 'settings.ini' file is used.
                    Default value: ''

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

VcfAnnotateHexplorer changelog

VcfAnnotateHexplorer 2024_08-113-g94a3b440

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