From 87f94ba17324abb218fb9b21ec8e9def6ab147fa Mon Sep 17 00:00:00 2001 From: Marc Sturm Date: Wed, 15 Nov 2023 14:44:08 +0100 Subject: [PATCH] GSvar: added CNV reference correlation to sample table in run tab --- src/GSvar/GSvar.qrc | 4 +++- src/GSvar/Icons/NovaSeqX.png | Bin 0 -> 17132 bytes src/GSvar/SequencingRunWidget.cpp | 5 +++-- src/GSvar/SequencingRunWidget.ui | 31 ++++++++++++++---------------- 4 files changed, 20 insertions(+), 20 deletions(-) create mode 100644 src/GSvar/Icons/NovaSeqX.png diff --git a/src/GSvar/GSvar.qrc b/src/GSvar/GSvar.qrc index a64617cb0..42bf9b439 100644 --- a/src/GSvar/GSvar.qrc +++ b/src/GSvar/GSvar.qrc @@ -125,5 +125,7 @@ Icons/Virus.png Icons/IGV_active.png Resources/CCR_supported_genes.txt - Resources/CCR80_GRCh38.bed + Resources/CCR80_GRCh38.bed + Icons/NovaSeqX.png + diff --git a/src/GSvar/Icons/NovaSeqX.png b/src/GSvar/Icons/NovaSeqX.png new file mode 100644 index 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SLOT(openSampleTab(int))); - connect(ui_->b_export_sample_sheet, SIGNAL(clicked(bool)), this, SLOT(exportSampleSheet())); + connect(ui_->novaseqx_samplesheet_btn, SIGNAL(clicked(bool)), this, SLOT(exportSampleSheet())); QAction* action = new QAction(QIcon(":/Icons/NGSD_sample.png"), "Open processed sample tab", this); ui_->samples->addAction(action); connect(action, SIGNAL(triggered(bool)), this, SLOT(openSelectedSampleTabs())); @@ -81,7 +81,7 @@ void SequencingRunWidget::updateGUI() ui_->backup->setText(query.value("backup_done").toString()=="1" ? "yes" : "no"); //#### activate SampleSheet #### - ui_->b_export_sample_sheet->setEnabled((query.value("d_type").toString() == "NovaSeqXPlus") || (query.value("d_type").toString() == "NovaSeqX")); + ui_->novaseqx_samplesheet_btn->setEnabled((query.value("d_type").toString() == "NovaSeqXPlus") || (query.value("d_type").toString() == "NovaSeqX")); //#### run quality #### updateReadQualityTable(); @@ -528,6 +528,7 @@ void SequencingRunWidget::setQCMetricAccessions(const QSet& sample_type if (sample_types.contains("DNA") || sample_types.contains("DNA (amplicon)") || sample_types.contains("DNA (native)")) { qc_metric_accessions_ << "QC:2000113"; // CNV count + qc_metric_accessions_ << "QC:2000114"; // CNV coverage profile correlation } if (sample_types.contains("RNA")) diff --git a/src/GSvar/SequencingRunWidget.ui b/src/GSvar/SequencingRunWidget.ui index 4319c2eb8..a4ec9dcc8 100644 --- a/src/GSvar/SequencingRunWidget.ui +++ b/src/GSvar/SequencingRunWidget.ui @@ -92,6 +92,20 @@ + + + + Export NovaSeq X sample sheet + + + ... + + + + :/Icons/NovaSeqX.png:/Icons/NovaSeqX.png + + + @@ -554,23 +568,6 @@ - - - - false - - - Export SampleSheet for illumina NovaSeq X (Plus) - - - - - - - :/Icons/Table.png:/Icons/Table.png - - -