busco_resolver.py

import re

class busco_resolver:
    def __init__(self, busco_summary):
        self.busco_summary = busco_summary
        self.busco_summary_str = ''

        with open(busco_summary) as bf:
            for line in bf:
                self.busco_summary_str += line
            busco_summary_re = re.compile(r'C:(.+)%\[S:(.+)%,D:(.+)%\],F:(.+)%,M:(.+)%,n:(\d+).+\n\t(\d+)\tComplete BUSCOs \(C\)\t\t\t   \n\t(\d+)\tComplete and single-copy BUSCOs \(S\)\t   \n\t(\d+)\tComplete and duplicated BUSCOs \(D\)\t   \n\t(\d+)\tFragmented BUSCOs \(F\)\t\t\t   \n\t(\d+)\tMissing BUSCOs \(M\)\t\t\t   \n\t(\d+)\tTotal BUSCO groups searched')
            self.res_lis = busco_summary_re.findall(self.busco_summary_str)[0]
    
        self.busco_count = (float(self.res_lis[6]) + float(self.res_lis[9])) / float(self.res_lis[11])
# C:32.7%[S:26.3%,D:6.4%],F:5.8%,M:61.5%,n:171\t   \n
# \t56\tComplete BUSCOs (C)\t\t\t   \n
# \t45\tComplete and single-copy BUSCOs (S)\t   \n
# \t11\tComplete and duplicated BUSCOs (D)\t   \n
# \t10\tFragmented BUSCOs (F)\t\t\t   \n
# \t105\tMissing BUSCOs (M)\t\t\t   \n
# \t171\tTotal BUSCO groups searched\t\t   \n