-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathenvironment.yml
308 lines (308 loc) · 10.1 KB
/
environment.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
name: braker2
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.7.2=h166bdaf_0
- augustus=3.4.0=pl5262h5a9fe7b_2
- bamtools=2.5.1=hd03093a_10
- binutils_impl_linux-64=2.39=he00db2b_1
- binutils_linux-64=2.39=h5fc0e48_12
- biopython=1.81=py39h72bdee0_0
- blast=2.12.0=hf3cf87c_4
- boost-cpp=1.74.0=h312852a_4
- braker2=2.1.6=hdfd78af_5
- busco=5.3.2=pyhdfd78af_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.12.7=ha878542_0
- cairo=1.16.0=h6cf1ce9_1008
- cdbtools=0.99=hd03093a_7
- curl=7.83.1=h7bff187_0
- dendropy=4.5.2=pyh3252c3a_0
- diamond=2.0.15=hb97b32f_0
- entrez-direct=16.2=he881be0_1
- exonerate=2.4.0=h09da616_5
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=h8e229c2_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gawk=5.1.0=h7f98852_0
- gcc_impl_linux-64=9.5.0=h99780fb_19
- gcc_linux-64=9.5.0=h4258300_12
- gemoma=1.6.4=hdfd78af_1
- genomethreader=1.7.1=h87f3376_4
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=9.5.0=hf1096a2_19
- gfortran_linux-64=9.5.0=hdb51d14_12
- giflib=5.2.1=h0b41bf4_3
- glib=2.70.2=h780b84a_4
- glib-tools=2.70.2=h780b84a_4
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.6=he838d99_2
- gxx_impl_linux-64=9.5.0=h99780fb_19
- gxx_linux-64=9.5.0=h43f449f_12
- harfbuzz=3.1.1=h83ec7ef_0
- hmmer=3.1b2=3
- htslib=1.12=h9093b5e_1
- icu=68.2=h9c3ff4c_0
- infernal=1.1.4=h779adbc_0
- jbig=2.1=h7f98852_2003
- jpeg=9e=h0b41bf4_3
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=2.2.1=h9c3ff4c_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcups=2.3.3=hf5a7f15_1
- libcurl=7.83.1=h7bff187_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=9.5.0=h0a57e50_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.70.2=h174f98d_4
- libgomp=12.2.0=h65d4601_19
- libhwloc=2.7.1=h32351e8_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=h727a467_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.37=h21135ba_2
- libsanitizer=9.5.0=h2f262e1_19
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-devel_linux-64=9.5.0=h0a57e50_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.3.0=hf544144_1
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h72842e0_0
- libzlib=1.2.11=h166bdaf_1014
- lp_solve=5.5.2.5=h14c3975_1001
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- makehub=1.0.5=1
- metaeuk=5.34c21f2=h95f258a_0
- metis=5.1.0=h58526e2_1006
- mmseqs2=13.45111=h95f258a_1
- mpfr=4.2.0=hb012696_0
- mysql-connector-c=6.1.11=h6eb9d5d_1007
- ncurses=6.3=h27087fc_1
- numpy=1.24.2=py39h7360e5f_0
- openjdk=11.0.1=h516909a_1016
- openssl=1.1.1t=h0b41bf4_0
- pandas=2.0.0=py39h2ad29b5_0
- pango=1.48.10=h54213e6_2
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- perl=5.26.2=h36c2ea0_1008
- perl-apache-test=1.40=pl526_1
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-base=2.23=pl526_1
- perl-carp=1.38=pl526_3
- perl-class-data-inheritable=0.08=pl526_1
- perl-class-load=0.25=pl526_0
- perl-class-load-xs=0.10=pl526h6bb024c_2
- perl-class-method-modifiers=2.12=pl526_0
- perl-clone-choose=0.010=pl526_0
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-cpan-meta=2.150010=pl526_0
- perl-cpan-meta-requirements=2.140=pl526_0
- perl-cpan-meta-yaml=0.018=pl526_0
- perl-data-dumper=2.173=pl526_0
- perl-data-optlist=0.110=pl526_2
- perl-dbi=1.642=pl526_0
- perl-devel-globaldestruction=0.14=pl526_0
- perl-devel-overloadinfo=0.005=pl526_0
- perl-devel-stacktrace=2.04=pl526_0
- perl-dist-checkconflicts=0.11=pl526_2
- perl-encode=2.88=pl526_1
- perl-eval-closure=0.14=pl526h6bb024c_4
- perl-exception-class=1.44=pl526_0
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-cbuilder=0.280230=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-extutils-manifest=1.72=pl526_0
- perl-extutils-parsexs=3.35=pl526_0
- perl-file-homedir=1.004=pl526_2
- perl-file-path=2.16=pl526_0
- perl-file-spec=3.48_01=pl526_1
- perl-file-temp=0.2304=pl526_2
- perl-file-which=1.23=pl526_0
- perl-getopt-long=2.50=pl526_1
- perl-hash-merge=0.300=pl526_0
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-zlib=1.10=pl526_2
- perl-ipc-cmd=1.02=pl526_0
- perl-json=4.02=pl526_0
- perl-json-pp=4.04=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-list-util=1.38=pl526_1
- perl-locale-maketext-simple=0.21=pl526_2
- perl-logger-simple=2.0=pl526_0
- perl-math-utils=1.13=pl526_0
- perl-mce=1.837=pl526_0
- perl-module-build=0.4224=pl526_3
- perl-module-corelist=5.20190524=pl526_0
- perl-module-implementation=0.09=pl526_2
- perl-module-load=0.32=pl526_1
- perl-module-load-conditional=0.68=pl526_2
- perl-module-metadata=1.000036=pl526_0
- perl-module-runtime=0.016=pl526_1
- perl-module-runtime-conflicts=0.003=pl526_0
- perl-moo=2.003004=pl526_0
- perl-moose=2.2011=pl526hf484d3e_1
- perl-mro-compat=0.13=pl526_0
- perl-object-insideout=4.05=pl526_0
- perl-package-deprecationmanager=0.17=pl526_0
- perl-package-stash=0.38=pl526hf484d3e_1
- perl-package-stash-xs=0.28=pl526hf484d3e_1
- perl-parallel-forkmanager=2.02=pl526_0
- perl-params-check=0.38=pl526_1
- perl-params-util=1.07=pl526h6bb024c_4
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-perl-ostype=1.010=pl526_1
- perl-posix=1.38_03=pl526_1
- perl-role-tiny=2.000008=pl526_0
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-scalar-util-numeric=0.40=pl526_1
- perl-socket=2.027=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-sub-exporter=0.987=pl526_2
- perl-sub-exporter-progressive=0.001013=pl526_0
- perl-sub-identify=0.14=pl526h14c3975_0
- perl-sub-install=0.928=pl526_2
- perl-sub-name=0.21=pl526_1
- perl-sub-quote=2.006003=pl526_1
- perl-test-harness=3.42=pl526_0
- perl-test-pod=1.52=pl526_0
- perl-text-abbrev=1.02=pl526_0
- perl-text-parsewords=3.30=pl526_0
- perl-time-hires=1.9760=pl526h14c3975_1
- perl-try-tiny=0.30=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-version=0.9924=pl526_0
- perl-xsloader=0.24=pl526_0
- perl-yaml=1.29=pl526_0
- pip=23.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prodigal=2.6.3=hec16e2b_4
- pthread-stubs=0.4=h36c2ea0_1001
- python=3.9.13=h9a8a25e_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.9=3_cp39
- pytz=2023.3=pyhd8ed1ab_0
- r-base=4.1.1=hb67fd72_0
- r-cli=3.6.1=r41h38f115c_0
- r-colorspace=2.1_0=r41h133d619_0
- r-crayon=1.5.2=r41hc72bb7e_1
- r-ellipsis=0.3.2=r41h06615bd_1
- r-fansi=1.0.4=r41h133d619_0
- r-farver=2.1.1=r41h7525677_1
- r-ggplot2=3.4.2=r41hc72bb7e_0
- r-glue=1.6.2=r41h06615bd_1
- r-gtable=0.3.3=r41hc72bb7e_0
- r-isoband=0.2.7=r41h38f115c_1
- r-labeling=0.4.2=r41hc72bb7e_2
- r-lattice=0.21_8=r41h133d619_0
- r-lifecycle=1.0.3=r41hc72bb7e_1
- r-magrittr=2.0.3=r41h06615bd_1
- r-mass=7.3_58.3=r41h133d619_0
- r-matrix=1.5_4=r41he1ae0d6_0
- r-mgcv=1.8_42=r41he1ae0d6_0
- r-munsell=0.5.0=r41hc72bb7e_1005
- r-nlme=3.1_162=r41hac0b197_0
- r-pillar=1.9.0=r41hc72bb7e_0
- r-pkgconfig=2.0.3=r41hc72bb7e_2
- r-r6=2.5.1=r41hc72bb7e_1
- r-rcolorbrewer=1.1_3=r41h785f33e_1
- r-rlang=1.1.0=r41h38f115c_0
- r-scales=1.2.1=r41hc72bb7e_1
- r-tibble=3.2.1=r41h133d619_1
- r-utf8=1.2.3=r41h133d619_0
- r-vctrs=0.6.1=r41h38f115c_0
- r-viridislite=0.4.1=r41hc72bb7e_1
- r-withr=2.5.0=r41hc72bb7e_1
- readline=8.1=h46c0cb4_0
- samtools=1.7=1
- sed=4.8=he412f7d_0
- sepp=4.4.0=py39_0
- setuptools=67.6.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- spaln=2.4.7=pl5262h9a82719_0
- sqlite=3.38.5=h4ff8645_0
- suitesparse=5.10.1=h9e50725_1
- sysroot_linux-64=2.12=he073ed8_15
- tar=1.34=hb2e2bae_1
- tbb=2021.7.0=h924138e_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- trnascan-se=2.0.9=pl5262h779adbc_1
- tzdata=2023c=h71feb2d_0
- ucsc-bedtobigbed=377=ha8a8165_3
- ucsc-fatotwobit=377=ha8a8165_5
- ucsc-genepredcheck=377=ha8a8165_3
- ucsc-genepredtobed=377=ha8a8165_5
- ucsc-genepredtobiggenepred=377=ha8a8165_3
- ucsc-gtftogenepred=377=ha8a8165_5
- ucsc-hggcpercent=377=ha8a8165_3
- ucsc-ixixx=377=ha8a8165_3
- ucsc-twobitinfo=377=ha8a8165_3
- ucsc-wigtobigwig=377=ha8a8165_3
- wget=1.20.3=ha56f1ee_1
- wheel=0.40.0=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.11=h166bdaf_1014
- zstd=1.5.2=h8a70e8d_1
prefix: /root/miniconda3/envs/braker2