From 9709637ef8502ebec3bf6054fec2d8d024ad5883 Mon Sep 17 00:00:00 2001
From: George Chen <72078254+jiajic@users.noreply.github.com>
Date: Wed, 22 May 2024 00:49:29 -0400
Subject: [PATCH] fix: add module options to zzz.R

---
 DESCRIPTION |  6 +++---
 NEWS.md     |  4 ++--
 R/zzz.R     | 24 ++++++++++++++++++++++++
 3 files changed, 29 insertions(+), 5 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 75c036e60..6f9e00cbb 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: Giotto
 Title: Spatial Single-Cell Transcriptomics Toolbox
-Version: 4.0.7
+Version: 4.0.8
 Authors@R: c(
 	person("Ruben", "Dries", email = "rubendries@gmail.com",
 		 role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7650-7754")),
@@ -41,8 +41,8 @@ Imports:
     dbscan (>= 1.1-3),
     ggplot2 (>= 3.1.1),
     ggrepel,
-    GiottoUtils (>= 0.1.7),
-    GiottoVisuals (>= 0.2.1),
+    GiottoUtils (>= 0.1.8),
+    GiottoVisuals (>= 0.2.2),
     igraph (>= 1.2.4.1),
     jsonlite,
     limma,
diff --git a/NEWS.md b/NEWS.md
index bff60bc5c..44f4f4e10 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,5 @@
 
-# Giotto 4.0.7 (2024/05/21)
+# Giotto 4.0.8 (2024/05/22)
 
 ## Breaking changes
 * `crossSectionGenePlot()` removed. Use `crossSectionFeatPlot()` instead
@@ -12,7 +12,7 @@
 * updated `createCrossSections()`, `insertCrossSectionSpatPlot3D()`, `crossSectionPlot()`, `crossSectionFeatPlot3D()`, `insertCrossSectionFeatPlot3D()`, `crossSectionPlot3D()`, `crossSectionFeatPlot()`
 
 ## Changes
-* GiottoVisuals (>= 0.2.1) and GiottoClass (>= 0.3.1) are now required.
+* GiottoVisuals (>= 0.2.2), GiottoClass (>= 0.3.1), GiottoUtils (>= 0.1.8) are now required.
 
 # Giotto 4.0.6 (2024/05/13)
 
diff --git a/R/zzz.R b/R/zzz.R
index d15b5883c..ee9961f77 100644
--- a/R/zzz.R
+++ b/R/zzz.R
@@ -19,4 +19,28 @@
         data.table::setDTthreads(threads = cores)
         options("giotto.check_core" = FALSE)
     }
+
+    # options #
+
+    # GiottoVisuals #
+    # ------------- #
+    # colors continuous
+    init_option("giotto.color_cd_pal", c("blue", "white", "red"))
+    init_option("giotto.color_cs_pal", "viridis")
+    init_option("giotto.color_c_rev", FALSE)
+
+    # colors discrete
+    init_option("giotto.color_d_pal", "distinct")
+    init_option("giotto.color_d_rev", FALSE)
+    init_option("giotto.color_d_strategy", "interpolate")
+
+    # image resampling
+    init_option("giotto.plot_img_max_sample", 5e5)
+    init_option("giotto.plot_img_max_crop", 1e8)
+    init_option("giotto.plot_img_max_resample_scale", 100)
+
+    # GiottoUtils #
+    # ----------- #
+    init_option("giotto.verbose", TRUE)
+
 }