requirements-alt.txt

# Alternate version without 'uvloop', which was causing an error 'TypeError: 'Task' object is not callable' in Joe's environment when starting the PyCharm debugger on app.py.
aiohttp==3.8.1
aiosignal==1.2.0
airium==0.2.6
alabaster==0.7.12
annotated-types==0.6.0
antlr4-python3-runtime==4.9.3
anyio==4.0.0
appdirs==1.4.4
appnope==0.1.3
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
arrow==1.3.0
asttokens==2.4.0
async-lru==2.0.4
async-timeout==4.0.2
attrs==23.1.0
Babel==2.10.1
backcall==0.2.0
bcp47==0.0.4
beautifulsoup4==4.12.2
bioontologies==0.2.1
bioregistry==0.10.190
black==23.11.0
bleach==6.1.0
build==1.0.3
CacheControl==0.14.0
cachy==0.3.0
cattrs==23.2.3
certifi==2021.10.8
cffi==1.16.0
CFGraph==0.2.1
chardet==5.2.0
charset-normalizer==2.0.12
class_resolver==0.4.3
cleo==2.1.0
click==8.1.7
clikit==0.6.2
comm==0.1.4
commonmark==0.9.1
crashtest==0.4.1
curies==0.7.8
debugpy==1.8.0
decorator==5.1.1
defusedxml==0.7.1
Deprecated==1.2.13
deprecation==2.1.0
distlib==0.3.7
docutils==0.17.1
dulwich==0.21.7
et-xmlfile==1.1.0
eutils==0.6.0
exceptiongroup==1.1.3
executing==2.0.0
fastjsonschema==2.18.1
fastobo==0.12.3
filelock==3.13.1
flake8==6.1.0
fqdn==1.5.1
frozenlist==1.3.0
fsspec==2022.5.0
funowl==0.2.3
graphviz==0.20
greenlet==1.1.2
hbreader==0.9.1
html5lib==1.1
idna==3.3
ijson==3.2.3
imagesize==1.3.0
importlib-metadata==6.8.0
importlib_resources==6.4.0
iniconfig==2.0.0
installer==0.7.0
ipykernel==6.25.2
ipython==8.16.1
ipython-genutils==0.2.0
ipywidgets==8.1.1
isodate==0.6.1
isoduration==20.11.0
jaraco.classes==3.3.0
jedi==0.19.1
Jinja2==3.1.1
joblib==1.1.0
json-flattener==0.1.9
json5==0.9.14
jsonasobj==1.3.1
jsonasobj2==1.0.4
jsonlines==4.0.0
jsonpatch==1.32
jsonpath-ng==1.5.3
jsonpointer==2.3
jsonschema==4.19.1
jsonschema-specifications==2023.7.1
jupyter==1.0.0
jupyter-console==6.6.3
jupyter-events==0.7.0
jupyter-lsp==2.2.0
jupyter_client==8.4.0
jupyter_core==5.4.0
jupyter_server==2.7.3
jupyter_server_terminals==0.4.4
jupyterlab==4.0.7
jupyterlab-pygments==0.2.2
jupyterlab-widgets==3.0.9
jupyterlab_server==2.25.0
keyring==24.3.0
kgcl==0.1.0
kgcl-rdflib==0.5.0
kgcl_schema==0.6.8
lark==1.1.2
linkml==1.2.14
linkml-dataops==0.1.0
linkml-renderer==0.3.0
linkml-runtime==1.2.7
lockfile==0.12.2
lxml==5.2.1
markdown-it-py==2.1.0
MarkupSafe==2.1.1
matplotlib-inline==0.1.6
mccabe==0.7.0
mdit-py-plugins==0.3.0
mdurl==0.1.1
mistune==3.0.2
more-click==0.1.2
more-itertools==10.1.0
msgpack==1.0.4
multidict==6.0.2
mypy-extensions==1.0.0
myst-parser==0.18.0
nbclient==0.8.0
nbconvert==7.9.2
nbformat==5.9.2
ndex2==3.8.0
nest-asyncio==1.5.8
networkx==3.2.1
notebook==7.0.5
notebook_shim==0.2.3
numpy==1.24.4
nxontology==0.4.1
oaklib==0.1.23
ols-client==0.1.4
ontoportal-client==0.0.4
openpyxl==3.0.10
overrides==7.4.0
owl-on-fhir==1.1.5
packaging==23.2
pandas==2.2.1
pandasql==0.7.3
pandocfilters==1.5.0
pansql==0.0.1
parse==1.19.0
parso==0.8.3
pastel==0.2.1
pathspec==0.12.1
pbr==5.8.1
pexpect==4.8.0
pickleshare==0.7.5
pkginfo==1.9.6
platformdirs==3.11.0
pluggy==1.4.0
ply==3.11
poetry==1.8.2
poetry-core==1.9.0
poetry-plugin-export==1.6.0
prefixcommons==0.1.12
prefixmaps==0.2.2
prometheus-client==0.17.1
prompt-toolkit==3.0.39
pronto==2.5.6
psutil==5.9.5
ptyprocess==0.7.0
pure-eval==0.2.2
pycodestyle==2.11.1
pycparser==2.21
pydantic==2.6.4
pydantic_core==2.16.3
pyflakes==3.1.0
Pygments==2.12.0
PyJSG==0.11.10
pylev==1.4.0
pyparsing==2.4.7
pyproject_hooks==1.0.0
pyrsistent==0.18.1
PyShEx==0.8.1
PyShExC==0.9.1
pysolr==3.9.0
pystow==0.5.4
pytest==8.1.1
pytest-logging==2015.11.4
python-dateutil==2.8.2
python-json-logger==2.0.7
PyTrie==0.4.0
pytz==2022.1
PyYAML==6.0.1
pyzmq==25.1.1
qtconsole==5.4.4
QtPy==2.4.0
rapidfuzz==3.5.2
ratelimit==2.2.1
rdflib==7.0.0
rdflib-jsonld==0.6.1
rdflib-shim==1.0.3
readme-renderer==35.0
recommonmark==0.7.1
referencing==0.30.2
requests==2.31.0
requests-cache==1.2.0
requests-toolbelt==1.0.0
rfc3339-validator==0.1.4
rfc3986==2.0.0
rfc3986-validator==0.1.1
rfc3987==1.3.8
rich==12.4.4
rpds-py==0.18.0
ruamel.yaml==0.17.21
ruamel.yaml.clib==0.2.6
scikit-learn==1.0.2
scipy==1.8.0
semsimian==0.2.15
semsql==0.3.3
Send2Trash==1.8.2
shellingham==1.5.4
ShExJSG==0.8.2
six==1.16.0
sniffio==1.3.0
snowballstemmer==2.2.0
sortedcontainers==2.4.0
soupsieve==2.5
sparqlslurper==0.5.1
SPARQLWrapper==2.0.0
Sphinx==4.5.0
sphinx-click==4.2.0
sphinxcontrib-applehelp==1.0.2
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==2.0.0
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.5
SQLAlchemy==1.4.36
SQLAlchemy-Utils==0.38.2
sssom==0.4.9
sssom-schema==0.15.2
stack-data==0.6.3
stevedore==3.5.0
tenacity==8.2.3
terminado==0.17.1
threadpoolctl==3.1.0
tinycss2==1.2.1
tomli==2.0.1
tomlkit==0.12.3
tornado==6.3.3
tqdm==4.64.0
traitlets==5.11.2
trove-classifiers==2023.11.29
twine==4.0.1
types-python-dateutil==2.8.19.14
typing_extensions==4.10.0
tzdata==2024.1
uri-template==1.3.0
url-normalize==1.4.3
urllib3==1.26.9
validators==0.26.0
virtualenv==20.26.1
virtualenv-clone==0.5.7
virtualenvwrapper==6.1.0
watchdog==2.1.9
wcwidth==0.2.8
webcolors==1.13
webencodings==0.5.1
websocket-client==1.6.4
widgetsnbextension==4.0.9
wrapt==1.14.0
xattr==1.1.0
yarl==1.7.2
zipp==3.8.0