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clinicalTable.html
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<html>
<head>
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<title>Clinical Platforms</title>
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<div class="container-fluid main-container">
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<div class="container">
<div class="navbar-header">
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<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
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<a class="navbar-brand" href="index.html"><img id="logo" style="width: 75px;" src="ITCRLogo.png" /></a>
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<ul class="nav navbar-nav">
<li>
<a href="index.html">
<span class="fa fa-home"></span>
Home
</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
<span class="fa fa-desktop"></span>
Computing Resources
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="platformsOverview.html">
<span class="fa fa-search-plus"></span>
Platforms overview
</a>
</li>
<li>
<a href="multiTable.html">
<span class="fa fa-stream"></span>
Multi-data type platforms
</a>
</li>
<li>
<a href="imagingTable.html">
<span class="fa fa-camera-retro"></span>
Imaging platforms
</a>
</li>
<li>
<a href="omicsTable.html">
<span class="fa fa-dna"></span>
Omics platforms
</a>
</li>
<li>
<a href="clinicalTable.html">
<span class="fa fa-heartbeat"></span>
Clinical platforms
</a>
</li>
<li>
<a href="allToolsTables.html">
<span class="fa fa-th"></span>
All platforms
</a>
</li>
</ul>
</li>
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Data Resources
</a>
</li>
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<span class="fa fa-envelope"></span>
Contact
</a>
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</a>
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</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div id="header">
<h1 class="title toc-ignore"><strong>Clinical Platforms</strong></h1>
</div>
<div id="overview" class="section level3">
<h3><strong>Overview</strong></h3>
<p>The following table contains a list of clinical informatics platforms. These platforms work with several types of clinical data, such as EMR Text and Clinical Notes, utilizing Natural Language Processing techniques, AI and machine learning algorithms in order to generate actionable insights with automated research tools.</p>
<strong>Table keys:</strong>
<div title="Table keys">
<p><img src="resources/images/Hyperlink2.png" height="30"> </img> = Main Link, <img src="resources/images/Documentation2.png" height="30"> </img> = Documentation, <img src="resources/images/Publication2.png" height="30"> </img> = Publications, <img src="ITCRLogo.png" height="25"> </img> = ITCR Funded</p>
</div>
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<\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>Text Information Extraction System (TIES)<\/b>:<br><\/br><a href=\"https://sourceforge.net/projects/caties/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>FeTS<\/b>:<br><\/br><a href=\"https://www.med.upenn.edu/cbica/fets/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> 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GARDE has been deployed in clinical settings at two academic medical centers and their respective cancer centers (University of Utah Health/Huntsman Cancer Institute and New York University Langone Health) in support of the BRIDGE trial, funded by NCI’s Cancer Moonshot program.","TIES is a service based software system for acquiring, deidentifying, and processing clinical text reports using natural language processing, and also for querying, sharing and using this data to foster tissue and image based research, within and between institutions.","FeTS is an open-source toolkit aimed at detecting tumor boundary data from patient imaging data. This platform emphasizes data deidentification for securing sharing models between researchers, allowing for collaborative improvements to be made to these models.","ATLAS.ti is a qualitative analysis platform that works with several data types such as video, audio, images, surveys, and social media data. There are also several tools such as text data analysis used for sentiment analysis and named-entity recognition.","D2Refine is an integrated platform that enables cancer study data/metadata harmonization and quality assurance. The platform is based on the Open Refine and enhanced with a suite of plugins."],["Designed for use within EHR systems","Extracts information from Surgical Pathology Reports;","This open-source platform offers more advanced researchers an opportunity to work with pre-trained segmentation models of deep learning algorithms for easy analysis of radiographic imaging; This platform additionally provides collaborative options for resaerchers to improve these models without sharing sensitive clinical data.","Free trial; specifically works with sentiment analysis and text data analysis.","This platform works on top of the open-source tool OpenRefine to transform messy data disctionaries into cleaner ones"],["EMR Free-Text","Clinical Reports, EMRs","Tumor Segmentation","Images, Pdf, Audio, Video, Geo, Survey Data, Text Import, Social Network Comments, Reference Manager Data, AV Transcripts","Sequence"],["<a href=\"https://www.opencds.org/pages/join\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://sourceforge.net/projects/caties/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://www.med.upenn.edu/cbica/fets/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://atlasti.com/atlas-ti-product-feature-comparison/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Paid<\/a>","<a href=\"https://github.com/caCDE-QA/D2Refine/wiki\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>"],["No Data Provided","Curated Data Sources","<a href=\"https://www.cancerimagingarchive.net/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>TCIA<\/a>, IDC","No Data Provided","<a href=\"https://www.ncbi.nlm.nih.gov/gap/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>dbGAP<\/a>, <a href=\"https://phekb.org/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>PheKB<\/a>, <a href=\"https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>TCGA<\/a>"]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th>Platform<\/th>\n <th>Subcategories<\/th>\n <th>Summary<\/th>\n <th>Unique Factor<\/th>\n <th>Types of Data<\/th>\n <th>Price<\/th>\n <th>Data Provided<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"scrollX":true,"autoWidth":true,"pageLength":10,"scrollCollapse":true,"fillContainer":true,"order":[0,"asc"],"columnDefs":[{"className":"dt-center","targets":"_all"},{"width":"280px","targets":2},{"width":"120px","targets":3}],"initComplete":"function(settings, json) {\n$(this.api().table().header()).css({'backgroundColor': '#3f546f'});\n$(this.api().table().header()).css({'color': '#fff'});\n}","orderClasses":false,"orderCellsTop":true}},"evals":["options.initComplete"],"jsHooks":[]}</script>
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