generated from jhudsl/OTTR_Template_Website
-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathimagingTable.html
419 lines (337 loc) · 28.5 KB
/
imagingTable.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>Imaging Platforms</title>
<script src="site_libs/header-attrs-2.10/header-attrs.js"></script>
<script src="site_libs/jquery-1.12.4/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/spacelab.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<script src="site_libs/htmlwidgets-1.5.2/htmlwidgets.js"></script>
<link href="site_libs/datatables-css-0.0.0/datatables-crosstalk.css" rel="stylesheet" />
<script src="site_libs/datatables-binding-0.15/datatables.js"></script>
<link href="site_libs/dt-core-1.10.20/css/jquery.dataTables.min.css" rel="stylesheet" />
<link href="site_libs/dt-core-1.10.20/css/jquery.dataTables.extra.css" rel="stylesheet" />
<script src="site_libs/dt-core-1.10.20/js/jquery.dataTables.min.js"></script>
<link href="site_libs/nouislider-7.0.10/jquery.nouislider.min.css" rel="stylesheet" />
<script src="site_libs/nouislider-7.0.10/jquery.nouislider.min.js"></script>
<link href="site_libs/selectize-0.12.0/selectize.bootstrap3.css" rel="stylesheet" />
<script src="site_libs/selectize-0.12.0/selectize.min.js"></script>
<link href="site_libs/crosstalk-1.1.0.1/css/crosstalk.css" rel="stylesheet" />
<script src="site_libs/crosstalk-1.1.0.1/js/crosstalk.min.js"></script>
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
<link rel="shortcut icon" href="resources/images/favicon_ITCR.ico" />
<!--- 11/8/22 Awan: added the favicon_ITCR.ico file to the resources/image folder and included the favicon to the website. --->
<!--- go to https://favicon.io/favicon-converter/ to upload an image to make a new favicon.io. You will need to replace the current favicon.io image with the one in the downloaded directory from the website. The current image is in the resources/images/ directory --->
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<style type="text/css">code{white-space: pre;}</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>
<link rel="stylesheet" href="styles.css" type="text/css" />
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
pre code {
padding: 0;
}
</style>
<style type="text/css">
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark it active
menuAnchor.tab('show');
// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
});
</script>
<!-- tabsets -->
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "";
border: none;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
</head>
<body>
<div class="container-fluid main-container">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html"><img id="logo" style="width: 75px;" src="ITCRLogo.png" /></a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">
<span class="fa fa-home"></span>
Home
</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
<span class="fa fa-desktop"></span>
Computing Resources
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="platformsOverview.html">
<span class="fa fa-search-plus"></span>
Platforms overview
</a>
</li>
<li>
<a href="multiTable.html">
<span class="fa fa-stream"></span>
Multi-data type platforms
</a>
</li>
<li>
<a href="imagingTable.html">
<span class="fa fa-camera-retro"></span>
Imaging platforms
</a>
</li>
<li>
<a href="omicsTable.html">
<span class="fa fa-dna"></span>
Omics platforms
</a>
</li>
<li>
<a href="clinicalTable.html">
<span class="fa fa-heartbeat"></span>
Clinical platforms
</a>
</li>
<li>
<a href="allToolsTables.html">
<span class="fa fa-th"></span>
All platforms
</a>
</li>
</ul>
</li>
<li>
<a href="dataResourceTable.html">
<span class="fa fa-database"></span>
Data Resources
</a>
</li>
<li>
<a href="contact.html">
<span class="fa fa-envelope"></span>
Contact
</a>
</li>
<li>
<a href="feedback.html">
<span class="fa fa-comments"></span>
Feedback Form
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div id="header">
<h1 class="title toc-ignore"><strong>Imaging Platforms</strong></h1>
</div>
<div id="overview" class="section level3">
<h3><strong>Overview</strong></h3>
<p>The following table contains a list of imaging informatics platforms. These platforms work with several imaging data types, ranging from pathology imaging to radiographic imaging. These platforms allow researchers to create custom workflows, view and interact with analysis results, utilize imaging algorithms, as well as visualize and report analysis results.</p>
<strong>Table keys:</strong>
<div title="Table keys">
<p><img src="resources/images/Hyperlink2.png" height="30"> </img> = Main Link, <img src="resources/images/Documentation2.png" height="30"> </img> = Documentation, <img src="resources/images/Publication2.png" height="30"> </img> = Publications, <img src="ITCRLogo.png" height="25"> </img> = ITCR Funded</p>
</div>
<div id="htmlwidget-7ee851131214aab72706" style="width:100%;height:auto;" class="datatables html-widget"></div>
<script type="application/json" data-for="htmlwidget-7ee851131214aab72706">{"x":{"filter":"top","filterHTML":"<tr>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n <td data-type=\"character\" style=\"vertical-align: top;\">\n <div class=\"form-group has-feedback\" style=\"margin-bottom: auto;\">\n <input type=\"search\" placeholder=\"All\" class=\"form-control\" style=\"width: 100%;\"/>\n <span class=\"glyphicon glyphicon-remove-circle form-control-feedback\"><\/span>\n <\/div>\n <\/td>\n<\/tr>","data":[["<b>Tumor Heterogenity Research Interactive Visualization Environment (THRIVE)<\/b>:<br><\/br><a href=\"https://www.csb.pitt.edu/ith/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"https://www.csb.pitt.edu/ith/publications.html\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>Cloud-based Image Biomarker Platform (C-BIBOP)<\/b>:<br><\/br><a href=\"http://cbibop.github.io/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"https://github.com/cbibop/ProjectUpdatesAndWiki/wiki\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>Pathology Imaging Informatics Platform (PIIP)<\/b>:<br><\/br><a href=\"http://pathiip.org/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"http://pathiip.org/?q=Biblio\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>Quantitative Imaging In Pathology (QUIP)<\/b>:<br><\/br><a href=\"https://sbu-bmi.github.io/quip_distro/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>XNAT<\/b>:<br><\/br><a href=\"https://www.xnat.org/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"https://wiki.xnat.org/documentation\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"https://www.xnat.org/about/xnat-publications.php\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>RADIOMICS.io<\/b>:<br><\/br><a href=\"https://www.radiomics.io/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"https://www.radiomics.io/science.html\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>Cancer Slide Digital Archive (CDSA)<\/b>:<br><\/br><a href=\"https://cancer.digitalslidearchive.org/#!/CDSA/acc/TCGA-OR-A5J1\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>LesionTracker / OHIF Web Image Viewer<\/b>:<br><\/br><a href=\"https://ohif.org/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"https://docs.ohif.org/history/v1/\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>PRISM - Platform for Imaging in Precision Medicine\n<\/b>:<br><\/br><a href=\"https://www.prismclinical.com/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"https://ascopubs.org/doi/full/10.1200/CCI.20.00001\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>","<b>OHIF<\/b>:<br><\/br><a href=\"https://ohif.org/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"https://v3-docs.ohif.org/\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"NA\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a>","<b>The Cancer Imaging Phenomics Toolkit (CaPTk)<\/b>:<br><\/br><a href=\"https://www.med.upenn.edu/cbica/captk/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Main Link\"> <\/div><img src=\"resources/images/Hyperlink2.png\" height=\"30\"> <\/img><\/a><a href=\"https://cbica.github.io/CaPTk/\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Documentation\"> <\/div><img src=\"resources/images/Documentation2.png\" height=\"30\"> <\/img><\/a><a href=\"https://doi.org/10.1117/1.jmi.5.1.011018\"style=\"color: #be3b2a\"target=\"_blank\"<div title=\"Publications\"> <\/div><img src=\"resources/images/Publication2.png\" height=\"30\"> <\/img><\/a><br><\/br><img src=\"ITCRLogo.png\" height=\"40\"><\/img>"],["Biomedical Imaging","Biomedical Imaging","Biomedical Imaging","Biomedical Imaging","Biomedical Imaging","Radiomics","Pathology","Biomedical Imaging","Biomedical Imaging","Biomedical Imaging","Radiomics"],["A platform for quantitative evaluation of intratumoral spatial heterogeneity in multiplexed immunofluorescence images, via characterization of the spatial interactions between different cellular phenotypes and non-cellular constituents in the tumor microenvironment. A plugin mechanism enables researches to add and share their own heterogeneity algorithms.","C-BIBOP is a cloud based platform for medical imaging algorithm comparisons. C-BIBOP is used to conduct challenges and benchmarks and uses Docker containers to share algorithm.","Freely downloadable pathology viewer which supports viewing, annotation and analysis of Whole Slide Images. Functionality will be extended as part of the Pathology Image Informatics Platform.","QuIP is an integrated software platform designed to support analysis, management, and exploration of whole slide tissue images for cancer research. The QuIP software platform consists of a set of docker containers, which provide analysis execution and data management backend services, and web applications to load and visualize whole slide tissue images (stored in supported file formats)  and explore analysis results.","XNAT is an open source imaging informatics platform designed to support institutional image repositories, image-based clinical trials, and translational imaging research.","RADIOMICS.io is a open source platform for informatics developments for radiographic phenotyping using automated algorithms, such as engineered features or using deep learning technologies. With this platform, we aim to establish a reference standard for radiomic analyses, provide a tested and maintained resource, and to grow the community of radiomic developers addressing critical needs in cancer research.","The CDSA is a web-based platform to support the sharing, managment and analysis of digital pathology data. The Emory Instance currently hosts over 23,000 images from The Cancer Genome Atlas, and the software is being developed within the ITCR grant to be deployable as a digital pathology platform for other labs and Cancer Institutes.","Extensible open-source zero-footprint web image viewer for oncology imaging. \"LesionTracker\" is a web browser based platform for viewing and measuring lesion metrics for tracking oncology trials.","Prism is a clinical imaging platform that specializes in fMRI, DTI, and advanced physiological sequences. This platform aims to compile image data into a single source, providing anomatomical, functional and physiological image sequences within a single view.","The Open Health Imaging Foundation (OHIF) is an open-source web-based medical imaging platform. This platform aims to provide tools and resources for radiology analysis and whole-slide microscopy image analysis.","CaPTk is a software platform for analysis of radiographic cancer images, currently focusing on brain, breast, and lung cancer that integrates advanced, validated tools performing various aspects of medical image analysis, that have been developed in the context of active clinical research studies and collaborations toward addressing real clinical needs. CaPTk aims to facilitate the swift translation of advanced computational algorithms into routine clinical quantification, analysis, decision making, and reporting workflow."],["A flexible image platform that allows users to combine curated algorithms with their own data and analyses methods","This platform works with medical imaging; this uses Docker containers for data sharing","Allows for the compilation of user data and use of third party algorithms for analysis.","Focuses on imaging and analysis of whole slide tissue imaging; Highly customizable for data organization","This is an open-source platform that allows for data usage and collaboration primarily with clinical data; HIPAA compliant","This is an open-source platform that aims combine radiomics imaging with deep learning features","This platform hosts both TCGA images and metadata for visual research purposes","OHIF focuses on imaging analysis, providing a user-friendly interface for radiology and whole-slide imaging","PRISM was designed to work directly with the data provided in the Cancer Imaging Archive (TCIA)","Focuses specifically on medical imaging, allowing for a wide scope of applications","CaPTk is a stand-alone software client that allows for free image analysis through the Image Processing Portal (IPP) that offers compute power through CaPTk's supporting high performance computing cluster."],["Microarray, Pathology Imaging","Radiographic Imaging","Pathology Imaging","Pathology Imaging","Radiographic Imaging","Radiographic Imaging","Pathology Imaging","Radiographic Imaging, General Imaging","Radiographic Imaging, Liquid Chromatography/Mass Spectrometry","Pathology Imaging, Radiographic Imaging","Radiographic Imaging"],["<a href=\"https://www.csb.pitt.edu/ith/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"http://cbibop.github.io/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://pathcore.com/flow\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free/Paid<\/a>","<a href=\"https://sbu-bmi.github.io/quip_distro/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://www.xnat.org/download/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://www.radiomics.io/pyradiomics.html\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://cancer.digitalslidearchive.org/#!/CDSA/acc/TCGA-OR-A5J1\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://docs.ohif.org/history/v1/essentials/installation.html\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://www.prismclinical.com/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Paid<\/a>","<a href=\"https://v3-docs.ohif.org/development/getting-started\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>","<a href=\"https://github.com/CBICA/CaPTk/#downloads\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Pricing Link\"> <\/div>Free<\/a>"],["Curated Data Sources","Curated Data Sources","Curated Data Sources","Collaborative/User Data Sources","N/A","<a href=\"https://wiki.cancerimagingarchive.net/display/Public/NSCLC-Radiomics\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>NSCLC Radiomics<\/a>","<a href=\"https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>TCGA<\/a>","Curated Data Sources","<a href=\"https://www.cancerimagingarchive.net/\"style=\"color: #be3b2a\" target=\"_blank\"<div title=\"Resource Link\"> <\/div>TCIA<\/a>","DICOMweb Imaging","Sample Data available within CaPTk"]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th>Platform<\/th>\n <th>Subcategories<\/th>\n <th>Summary<\/th>\n <th>Unique Factor<\/th>\n <th>Types of Data<\/th>\n <th>Price<\/th>\n <th>Data Provided<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"scrollX":true,"autoWidth":true,"pageLength":10,"scrollCollapse":true,"fillContainer":true,"order":[0,"asc"],"columnDefs":[{"className":"dt-center","targets":"_all"},{"width":"280px","targets":2},{"width":"130px","targets":3}],"initComplete":"function(settings, json) {\n$(this.api().table().header()).css({'backgroundColor': '#3f546f'});\n$(this.api().table().header()).css({'color': '#fff'});\n}","orderClasses":false,"orderCellsTop":true}},"evals":["options.initComplete"],"jsHooks":[]}</script>
</div>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open');
});
});
</script>
<!-- code folding -->
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>