From 607470f50f0a2e732544d669a5e8bcf91fb5709b Mon Sep 17 00:00:00 2001
From: Jorge Langa <jorge.langa.arranz@gmail.com>
Date: Mon, 27 May 2019 12:21:10 +0200
Subject: [PATCH] Bugfix. ensembl was hardcoded

---
 bin/compare_to_gff3 | 2 +-
 exfi/__init__.py    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/bin/compare_to_gff3 b/bin/compare_to_gff3
index 412d96c..546a9ce 100755
--- a/bin/compare_to_gff3
+++ b/bin/compare_to_gff3
@@ -47,7 +47,7 @@ if __name__ == '__main__':
         )
 
     # Process GFF3
-    BED3_TRUE = gff3_to_bed3(ARGS['input_gff3'], mode='ensembl')
+    BED3_TRUE = gff3_to_bed3(ARGS['input_gff3'], mode=ARGS['gff3_type'])
 
     # Filter out transcripts not present in the reference
     TRANSCRIPT_IDS = fasta_to_dict(ARGS['fasta']).keys()
diff --git a/exfi/__init__.py b/exfi/__init__.py
index 57ca586..5cf60d9 100644
--- a/exfi/__init__.py
+++ b/exfi/__init__.py
@@ -3,4 +3,4 @@
 filters.
 """
 
-__version__ = '1.5.5'
+__version__ = '1.5.6'