app_inputs.yaml

CTRL:
  SMOOTH: False 
  WINDOW_SIZE: 9
  POLY_ORDER: 3


RTM:
  DIRECT: 1
  NBR_WVL: 480
  APRX_TYP: 2
  DELTA: True
  SOLZEN: 50
  INCOMING: 0
  VIS_MAX_IDX: 39
  NIR_MAX_IDX: 480

ICE:
  DZ: [0.02,1]  # thickness of each vertical layer (unit : m)
  LAYER_TYPE: [1,1]  # Fresnel layers (set all to 0 if toon : True)
  CDOM: [0, 0]  # Only for layer type :: 1
  RHO: [500, 500]  # density of each layer (unit : kg m-3)
  RF: 2
  SHP: [0, 0]  # grain shape (He et al. 2016, 2017)
  RDS: [12500, 12500]  # effective grain or bubble radius
  WATER_COATING: [0, 0]  # radius of optional liquid water coating
  LWC: [0.1, 0.1] # LWC content in snow/ice (not using coated spheres, see the doc)
  LWC_PCT_BBL: 0.5 # % of LWC in ice present as closed pores vs matrix water
  HEX_SIDE: [ 10000, 10000]
  HEX_LENGTH: [10000, 10000]
  SHP_FCTR: [ 0, 0]
  AR: [0, 0]

PATHS:
  WVL: "Data/OP_data/wavelengths.csv"
  SPHERE_ICE:  "Data/OP_data/480band/ice_spherical_grains/"
  SPHERE_WATER:  "Data/OP_data/480band/water_spherical_grains/"
  HEX_ICE: "Data/OP_data/480band/ice_hexagonal_columns/"
  BUBBLY_ICE: "Data/OP_data/480band/bubbly_ice_files/"
  RI_ICE: "Data/OP_data/480band/"
  OP_DIR_STUBS: ["ice_Wrn84/ice_Wrn84_", "ice_Wrn08/ice_Wrn08_", "ice_Pic16/ice_Pic16_"]
  SFC: "/Data/OP_data/480band/r_sfc/blue_ice_spectrum_s10290721.csv"
  FN_ICE: "/Data/OP_data/480band/rfidx_ice.nc"
  FN_WATER: "/Data/OP_data/Refractive_Index_Liquid_Water_Segelstein_1981.csv"
  FLX_DIR: "Data/OP_data/480band/fsds/"
  ILLUMINATION_FILE_STUBS: ["swnb_480bnd_mlw", "swnb_480bnd_mls", "swnb_480bnd_saw",
                          "swnb_480bnd_sas",  "swnb_480bnd_smm", "swnb_480bnd_hmn",
                          "swnb_480bnd_trp"]


IMPURITIES:
  BC:
    NAME: "bc"
    FILE: "bc_ChCB_rn40_dns1270.nc"
    COATED: False
    UNIT: 0
    CONC: [0 ,0]

  SA:
    NAME: "sa"
    FILE: "snow_algae_empirical_Chevrollier2023.nc"
    COATED: False
    UNIT: 1
    CONC: [0 ,0]

  GA:
    NAME: "ga"
    FILE: "ice_algae_empirical_Chevrollier2023.nc"
    COATED: False
    UNIT: 1
    CONC: [0 ,0]

PLOT:
    FIG_SIZE: (8,6)
    FACECOLOR: "white"
    GRID: False
    GRIDCOLOR: ".8"
    XTICK_WIDTH: 1
    XTICK_SIZE: 5
    YTICK_WIDTH: 1
    YTICK_SIZE: 5
    LINEWIDTH: 1.25
    FONTSIZE: 20
    XTICK_BTM: True
    YTICK_LEFT: True
    SAVE: False
    SAVEPATH: ""

BIOOPTICAL:
    WET_DENSITY: 1060
    DRY_DENSITY: 684
    ABS_CFF_CALC: True
    PIGMENT_CONC: { "Data/pigments/alloxanthin.csv": 0,
                    "Data/pigments/antheraxanthin.csv": 0,
                    "Data/pigments/chl-a.csv": 0,
                    "Data/pigments/chl-b.csv": 0,
                    "Data/pigments/lutein.csv": 0,
                    "Data/pigments/neoxanthin.csv": 0,
                    "Data/pigments/pheophytin.csv": 0,
                    "Data/pigments/Photop_carotenoids.csv": 0,
                    "Data/pigments/Photos_carotenoids.csv": 0,
                    "Data/pigments/ppg.csv": 0,
                    "Data/pigments/trans_astaxanthin_ester.csv": 0,
                    "Data/pigments/trans_astaxanthin.csv": 0,
                    "Data/pigments/violaxanthin.csv": 0,
                    "Data/pigments/zeaxanthin.csv": 0,
                    }
    PIGMENT_DIR: "Data/pigments/"
    ABS_CFF_LOAD_RECONSTRUCTED: False
    ABS_CFF_LOAD_INVIVO: True
    ABS_CFF_FILE: "file.csv"
    PCKG_SA: False
    PCKG_GA: False
    DIR_PCKG: "Data/pigments/"
    K_WATER_DIR: "Data/OP_data/k_ice_480.csv"
    UNIT: 0
    CELL_VOLUME: 1500
    N_ALGAE: 1.4
    GO: True
    MIE: False
    CELL_R: 10
    CELL_L: 20
    PLOT_SSPS: True
    SAVEFIG_SSPS: False
    REPORT_DIMS: False
    PLOT_K_ABS_CFF: False
    SAVE_N_K_ABS_CFF: False
    SAVE_PLOT_K_ABS_CFF: False
    SAVE_PATH_FIG: "Data/pigments/"
    SAVE_NETCDF: False
    SAVE_PATH_NETCDF: "Data/OP_data/480band/lap/"
    INFO_NETCDF: "info"
    FILENAME_NETCDF: "alg"