TBProfiler v2.8.14

Changes

• Add compatibility with lofreq vcf format

TBProfiler v2.8.13

Changes

• Added freebayes as an option for lineage SNP calling
• Fix for #126

TBProfiler v2.8.12

Changes

• Fix for #121

TBProfiler v2.8.11

Changes

Minor bugfix in itol/collate function (Issue: #117)

TBProfiler v2.8.10

Changes

• Update library (Issue: #116)

TBProfiler v2.8.9

Changes

• Added marking of predictions with potential missing data in collate. Issue: #107

TBProfiler v2.8.8

Updates

• Added --snps flag to tb-profiler lineage to get in-depth report on the allelic depth at lineage defining SNPs (Issue: #101)
• Profile coverage over a certain threshold (Issue: #95)
• Get positions in genes with low coverage (Issue: #107)
• Fix to header formatting (PR: #102)
• Minor enhancements to lineage assignments

TBProfiler v2.8.6

• Change format of barcoding bed
• Update default database
• Add freebayes option
• Several bugfixes

TBProfiler v2.8.5

Changelog

• Fix #86

TBProfiler v2.8.4

Changelog

• Fix critical load_csq bug