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Add option for mapping to a reference #11

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jorvis opened this issue Feb 11, 2019 · 1 comment
Open

Add option for mapping to a reference #11

jorvis opened this issue Feb 11, 2019 · 1 comment
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jorvis commented Feb 11, 2019

Users often have a reference genome and a set of contigs. Add the option to do a nucmer mapping to the reference genome in order to order/orient the contigs into a pseudo molecule before running.
@jorvis jorvis self-assigned this Feb 11, 2019
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Note:
In addition to the above functionality, option for ordering contigs longest to shortest in a pseudomolecule will be very useful.

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