DESCRIPTION

Package: tfpscanner
Title: Transmission fitness polymorphism scanner 
Version: 0.3.0
Date: 2023-01-18
Author: Erik Volz, Olivia Boyd
Maintainer: Erik Volz <e.volz@imperial.ac.uk>
Description: A pipeline for scanning a SARS-CoV-2 phylogeny for clades with outlying growth 
  patterns and high evolutionary rates. 
Depends:
  R (>= 4.1.0)
Imports: 
    ape,
    dplyr,
    foreach,
    ggiraph,
    ggplot2,
    ggtree,
    glue,
    htmlwidgets (>= 1.6.0),
    knitr,
    lubridate,
    mgcv,
    mlesky,
    phangorn (>= 2.9.0),
    purrr,
    readr,
    rlang,
    Rmpi,
    scales,
    stats,
    stringr,
    tibble,
    treedater,
    utils
Suggests: 
    doMPI,
    svglite,
    testthat (>= 3.0.0),
    withr
Remotes: 
  emvolz-phylodynamics/mlesky
SystemRequirements: libopenmpi-dev
Encoding: UTF-8
License: MIT + file LICENSE
RoxygenNote: 7.2.3
Config/testthat/edition: 3