From f806cb153eb5c161b30e7f38210edd5d4e66eb65 Mon Sep 17 00:00:00 2001 From: Kye Date: Sat, 11 May 2024 22:24:20 -0700 Subject: [PATCH] {FEAT][TODOES] --- README.md | 16 +++++++++++----- 1 file changed, 11 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 2cceeab..4eef0ca 100644 --- a/README.md +++ b/README.md @@ -155,8 +155,14 @@ print(output.shape) # Todo -- [ ] Implement Figure A, implement triangle update, transition, -- [ ] Impelment Figure B, per token, cond, -- [ ] Implement Figure C: Network Chunk, -- [ ] Implement confidence module -- [ ] Implement Template Module +## Model Architecture +- Implement input Embedder from Alphafold2 openfold implementation +- Implement the template module from openfold +- Implement the MSA embedding from openfold +- Fix residuals and make sure pair representation and generated output goes into the diffusion model +- Implement reclying to fix residuals + + +## Training pipeline +- Get all datasets pushed to huggingface +