run-tests.yml

name: Run the test suite

on: [push, pull_request]

jobs:
  # run-tests:
  #   name: ${{ matrix.os }}, Python ${{ matrix.python-version }}
  #   runs-on: ${{ matrix.os }}
  #   strategy:
  #     fail-fast: false
  #     matrix:
  #       # os: ["ubuntu-latest", "macos-latest", "windows-latest"]
  #       os: ["ubuntu-latest"]
  #       python-version: ["3.6", "3.7", "3.8"]
  #   defaults:
  #     run:
  #       shell: bash -l {0}
  #   steps:
  #   - uses: actions/checkout@v2
  #   - uses: conda-incubator/setup-miniconda@v2
  #     with:
  #       auto-update-conda: true
  #       python-version: ${{ matrix.python-version }}
  #   - name: Conda info
  #     run: conda info
  #   - name: Conda list
  #     run: conda list
  #   - name: Install datalad
  #     run: |
  #       conda install -y -c conda-forge git-annex datalad
  #       git config --global user.email "user@mne.com"
  #       git config --global user.name "mne user"
  #   - name: Install Python dependencies
  #     run: |
  #       conda install -y -c conda-forge \
  #           python=${{ matrix.python-version }} \
  #           numpy scipy scikit-learn pandas json_tricks matplotlib \
  #           seaborn nibabel coloredlogs python-picard fire \
  #           typing_extensions  # for Python <3.8

  #       # Install MNE
  #       pip install -U https://api.github.com/repos/mne-tools/mne-python/zipball/master
  #       # Install MNE-BIDS
  #       pip install -U https://api.github.com/repos/mne-tools/mne-bids/zipball/master
  #   - name: Check installation
  #     run: |
  #       which python
  #       git-annex version
  #       datalad --version
  #       mne_bids --version
  #       mne --version
  #       python -c "import mne; mne.sys_info()"
  #   - name: Setup reports artifact storage
  #     run: mkdir ~/reports
  #   - name: test ds000246
  #     run: |
  #        export DS=ds000246
  #        python ./tests/run_tests.py ${DS}
  #        mkdir ~/reports/${DS}
  #        cp ~/mne_data/${DS}/derivatives/mne-study-template/*/**/*.html ~/reports/${DS}/
  #        cp ~/mne_data/${DS}/derivatives/mne-study-template/*/**/*.tsv ~/reports/${DS}/
  #        rm -rf ~/mne_data/${DS}/derivatives/mne-study-template/
  #   - name: Store artifacts
  #     uses: actions/upload-artifact@v2
  #     with:
  #       name: reports
  #       path: ~/reports

  check-style:
    name: Check style
    runs-on: "ubuntu-latest"
    strategy:
      fail-fast: false
    defaults:
      run:
        shell: bash -l {0}
    steps:
    - uses: actions/checkout@v2
    - uses: conda-incubator/setup-miniconda@v2
      with:
        auto-update-conda: true
    - name: Conda info
      run: conda info
    - name: Conda list
      run: conda list
    - name: Install flake8
      run: conda install -y flake8
    - name: Lint scripts with flake8
      run: flake8 ./run*.py ./scripts --exclude ./scripts/freesurfer/contrib
    - name: Lint config.py with flake8
      run: flake8 ./config.py --ignore=E501,W503,W504