From 595b9bd626676378b2cdd9ffc01771d3b0968451 Mon Sep 17 00:00:00 2001 From: Sanchit Saini Date: Thu, 26 Oct 2023 03:01:50 +0530 Subject: [PATCH] Update layout_karyogram docs as keepSeqlevels was moved to GenomeInfoDb --- man/layout_karyogram-method.Rd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/man/layout_karyogram-method.Rd b/man/layout_karyogram-method.Rd index 9899a8e..abd1994 100644 --- a/man/layout_karyogram-method.Rd +++ b/man/layout_karyogram-method.Rd @@ -78,7 +78,7 @@ autoplot(hg19IdeogramCyto, layout = "karyogram", cytobands = TRUE) ################################################### ### code chunk number 3: change-order ################################################### -library(GenomicRanges) +library(GenomeInfoDb) hg19 <- keepSeqlevels(hg19IdeogramCyto, paste0("chr", c(1:22, "X", "Y"))) head(hg19) autoplot(hg19, layout = "karyogram", cytobands = TRUE)