diff --git a/README.md b/README.md index 2697b56..ef43f10 100644 --- a/README.md +++ b/README.md @@ -16,6 +16,8 @@ gfatools gfa2fa -s out.gfa > out.fa ## Table of Contents + + - [Getting Started](#started) - [Introduction](#intro) - [Users' Guide](#uguide) @@ -28,8 +30,6 @@ gfatools gfa2fa -s out.gfa > out.fa ## Introduction - - Minigraph is a *proof-of-concept* sequence-to-graph mapper and graph constructor. It finds *approximate* locations of a query sequence in a sequence graph and incrementally augments an existing graph with long query subsequences @@ -50,6 +50,8 @@ non-standard dependency is [zlib][zlib]. ### Sequence-to-graph mapping + + To map sequences against a graph, you should prepare the graph in the [GFA format][gfa1], or preferrably the [rGFA format][rgfa]. If you don't have a graph, you can generate a graph from multiple samples (see the [Graph diff --git a/doc/example2.png b/doc/example2.png new file mode 100644 index 0000000..d2484b7 Binary files /dev/null and b/doc/example2.png differ