From fd7369d6cc80c641d18a15d792baa0fd336ba6eb Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 6 Mar 2024 09:19:07 -0500 Subject: [PATCH] Release miniprot-0.13 (r248) --- NEWS.md | 4 ++-- miniprot.1 | 2 +- miniprot.h | 2 +- nasw-tab.c | 4 ++-- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/NEWS.md b/NEWS.md index 3b779cd..f574ee3 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -Release 0.13-r247 (6 March 2024) +Release 0.13-r248 (6 March 2024) -------------------------------- Notable changes: @@ -18,7 +18,7 @@ Notable changes: * Bug fix: suppress an extra amino acid in the --trans or --aln output (#47). In rare cases, this may lead to memory violation. -(0.13: 6 March 2024, r247) +(0.13: 6 March 2024, r248) diff --git a/miniprot.1 b/miniprot.1 index 2251590..b0a75c2 100644 --- a/miniprot.1 +++ b/miniprot.1 @@ -1,4 +1,4 @@ -.TH miniprot 1 "5 March 2024" "miniprot-0.13 (r247)" "Bioinformatics tools" +.TH miniprot 1 "5 March 2024" "miniprot-0.13 (r248)" "Bioinformatics tools" .SH NAME .PP miniprot - protein-to-genome alignment with splicing and frameshifts diff --git a/miniprot.h b/miniprot.h index 5fe6760..2d3c49d 100644 --- a/miniprot.h +++ b/miniprot.h @@ -3,7 +3,7 @@ #include -#define MP_VERSION "0.13-r247" +#define MP_VERSION "0.13-r248" #define MP_F_NO_SPLICE 0x1 #define MP_F_NO_ALIGN 0x2 diff --git a/nasw-tab.c b/nasw-tab.c index b86ce6d..c89f2f4 100644 --- a/nasw-tab.c +++ b/nasw-tab.c @@ -23,7 +23,7 @@ static const char *ns_tab_codon_all[NS_MAX_TRANS_CODE + 1] = { "KNKNTTTT*S*SMIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVV*Y*YSSSSWCWCLFLFX", // 2: The Vertebrate Mitochondrial Code "KNKNTTTTRSRSMIMIQHQHPPPPRRRRTTTTEDEDAAAAGGGGVVVV*Y*YSSSSWCWCLFLFX", // 3: The Yeast Mitochondrial Code "KNKNTTTTRSRSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVV*Y*YSSSSWCWCLFLFX", // 4: The Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code - "KNKNTTTTSSSSMIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVV*Y*YSSSSWCWCLFLFX" // 5: The Invertebrate Mitochondrial Code + "KNKNTTTTSSSSMIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVV*Y*YSSSSWCWCLFLFX", // 5: The Invertebrate Mitochondrial Code "KNKNTTTTRSRSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVVQYQYSSSS*CWCLFLFX", // 6: Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear 0, // 7 0, // 8 @@ -51,7 +51,7 @@ static const char *ns_tab_codon_all[NS_MAX_TRANS_CODE + 1] = { "KNKNTTTTRSRSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVVEYEYSSSS*CWCLFLFX", // 30: Peritrich Nuclear "KNKNTTTTRSRSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVVEYEYSSSSWCWCLFLFX", // 31: Blastocrithidia Nuclear "KNKNTTTTRSRSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVV*YWYSSSS*CWCLFLFX", // 32: Balanophoraceae Plastid - "KNKNTTTTSSKSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVVYY*YSSSSWCWCLFLFX", // 33: Cephalodiscidae Mitochondrial + "KNKNTTTTSSKSIIMIQHQHPPPPRRRRLLLLEDEDAAAAGGGGVVVVYY*YSSSSWCWCLFLFX" // 33: Cephalodiscidae Mitochondrial }; uint8_t ns_tab_nt4[256], ns_tab_aa20[256], ns_tab_aa13[256], ns_tab_codon[64], ns_tab_codon13[64];