Error in heatmapPairs in ELMER

[Rahel14350]

Dear @tiagochst
I have this error in the last step of ELMER package. I have list of pair genes and I would plot them with heatmapPairs but I have this error. Can you please help me here:

> heatmapPairs(data = mae, 
+              group.col = "gene2",
+              group1 = "low", 
+              annotation.col = c("gene2", "exprs_rank"),
+              group2 = "high",
+              pairs = pair,
+              filename =  "heatmap.meth_expression.primary.results.pdf")
Ordering groups
Error in splitter_a(.data, .margins, .expand) : Invalid margin

Many thanks in advance,
Rahel

[tiagochst]

I would need to have the object to debug this problem. Please, is it possible to share it? Em 11 de fev de 2019, à(s) 07:39, RahelSh <[email protected]> escreveu:

…

Dear @tiagochst I have this error in the last step of ELMER package. I have list of pair genesand I would plot them with heatmapPairs but I have this error. Can you please help me here: > heatmapPairs(data = mae, + group.col = "gene2", + group1 = "low", + annotation.col = c("gene2", "exprs_rank"), + group2 = "high", + pairs = pair, + filename = "heatmap.meth_expression.primary.results.pdf") Ordering groups Error in splitter_a(.data, .margins, .expand) : Invalid margin Many thanks in advance, Rahel — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

[Rahel14350]

Yes, sure it is fine. Which file should I send to you?

[tiagochst]

I would need the mae and pair objects saved as an rda. Em 11 de fev de 2019, à(s) 08:23, RahelSh <[email protected]> escreveu:

…

Yes, sure it is fine. Which file should I send to you? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

[Rahel14350]

Dear Tiago,
I could solve the problem, I was using a column from "mae" which it was a factor and when I changed to Character, the error was gone and I could get the heatmap.
Many many thanks for your reply and help, Rahel