sort-slurm.sh

#!/bin/bash

# Submit this script with: sbatch <this-filename>

#SBATCH --time=24:00:00   # walltime
#SBATCH --ntasks=1   # number of processor cores (i.e. tasks)
#SBATCH --nodes=1   # number of nodes
#SBATCH -J "sort"   # job name

## /SBATCH -p general # partition (queue)
#SBATCH -o sort-slurm.%N.%j.out # STDOUT
#SBATCH -e sort-slurm.%N.%j.err # STDERR

# LOAD MODULES, INSERT CODE, AND RUN YOUR PROGRAMS HERE
/data/miniconda3/bin/conda init
source ~/.bashrc
envarg=`/data/src/PyHipp/envlist.py`
conda activate $envarg

python -u -c "import PyHipp as pyh; import time; from PyHipp import mountain_batch; mountain_batch.mountain_batch(); from PyHipp import export_mountain_cells; export_mountain_cells.export_mountain_cells(); print(time.localtime());"

conda deactivate
/data/src/PyHipp/envlist.py $envarg