Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

nonpareil error on empty FASTQ file #71

Open
fgvieira opened this issue Oct 9, 2024 · 0 comments
Open

nonpareil error on empty FASTQ file #71

fgvieira opened this issue Oct 9, 2024 · 0 comments

Comments

@fgvieira
Copy link

fgvieira commented Oct 9, 2024 •
edited
Loading

When running nonpareil on an emtpy file, I get the error:

Nonpareil v3.5.5
Fatal error:
Unexpected end of file while decompressing
 [      0.0] Fatal error: Unexpected end of file while decompressing

An empty file is still a valid FASTQ. Would it be possible to just print a warning and exit nicely?
@fgvieira fgvieira closed this as completed Oct 9, 2024
@fgvieira fgvieira reopened this Oct 9, 2024
@fgvieira fgvieira closed this as completed Oct 9, 2024
@fgvieira fgvieira reopened this Oct 9, 2024
@fgvieira fgvieira changed the title nonpareil never finishes nonpareil error on empty FASTQ file Oct 9, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@fgvieira