diff --git a/inst/doc/makeApackage.txt b/inst/doc/makeApackage.txt index da62e8d..17a8fc9 100644 --- a/inst/doc/makeApackage.txt +++ b/inst/doc/makeApackage.txt @@ -135,7 +135,9 @@ http://bioconductor.org/developers/how-to/web-query/ + DNA/RNA - Biostrings DNAstringset + gene sets - GSEABase GeneSet + genomic intervals - GenomicRanges Granges - + rectangular freature x sample data - (RNAseq count matrix, microarray) - SummarizedExperiment + + rectangular freature x sample data - (RNAseq count matrix, microarray) - + SummarizedExperiment + + Single Cell - SingleCellExperiement + Mass Spec - MSnbase + import/loading data - GTF, GFF, BED, BigWig, ... rtracklayer::import()